PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 345506 | ||||||||
Common Name | ARALYDRAFT_345506 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GRAS | ||||||||
Protein Properties | Length: 602aa MW: 66816.3 Da PI: 6.3129 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 245.4 | 2.3e-75 | 342 | 593 | 1 | 256 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103 l++lL++cA+av+++d ++a +lL++++ +++p gd +qRla++f+++L+arla+++s++yk + +++ s + +l+a++lf ++P+ k+s++++N++I 345506 342 LRSLLIHCAQAVAADDRRCAGQLLKQIRLHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRS---AAAVLKAHQLFLACCPFRKLSYFITNKTIR 441 689***************************************************************9999...999*************************** PP GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaV 204 + v +++rvH+iDf+i +G+QWp+L++ ++ g+p++RiTg++ p++g ++++eetg+rLa +A+++gvpfe+++ +ak++++++le+L+++++E ++V 345506 442 DLVGNSQRVHVIDFGILYGFQWPTLIHRFSM--YGSPKVRITGIEFPQPGfrPAQRVEETGQRLAAYAKQFGVPFEYKA-IAKKWDAVQLEDLDIDRDEITVV 541 ******************************9..8***************9*****************************.7********************** PP GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 n+ ++ ++l+desv++es+rd+vL+l+ +++P+++v+ + +n++ F++r 345506 542 NCLYRAENLHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTR 593 *************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 45.326 | 316 | 601 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.9E-73 | 342 | 593 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence Send to blast |
MITEPSLTGI SGTVNRNRLS GLPDQSASHS FTPVTLYDGF NYNLSSDHRN TVVAPSQNSV 60 FIREEEEEDP ADDFDFSDAV LGYISQMLNE EDMDDKVCML QESLDLETAE RSLYEAIGKK 120 YPPSPERNLA FADRNDENLD RVVPGNYTGG DCIGFGNGGI KPLSGGFTLD FRNPSSVLSV 180 PQSNGLITIY GDGIVESSKK SLYPDSNRES HQSVWLFSSG IEEASRFLPE QNIVNFREEN 240 CMNKGRKNSS RDEICVEEER SSKLPAVFGE DILRSDVVDK ILVHVPGEES MKEFDALREV 300 LKKGVEKKKA SVAQGGKRRE RGRGRGRGGG GGQNGKKEVV DLRSLLIHCA QAVAADDRRC 360 AGQLLKQIRL HSTPFGDGNQ RLAHCFANGL EARLAGTGSQ IYKGIVSKPR SAAAVLKAHQ 420 LFLACCPFRK LSYFITNKTI RDLVGNSQRV HVIDFGILYG FQWPTLIHRF SMYGSPKVRI 480 TGIEFPQPGF RPAQRVEETG QRLAAYAKQF GVPFEYKAIA KKWDAVQLED LDIDRDEITV 540 VNCLYRAENL HDESVKVESC RDTVLNLIGK INPDLFVFGI VNGAYNAPFF VTRKIIYLSN 600 D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-27 | 348 | 544 | 25 | 220 | Protein SCARECROW |
5b3h_A | 5e-27 | 348 | 544 | 24 | 219 | Protein SCARECROW |
5b3h_D | 5e-27 | 348 | 544 | 24 | 219 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 345506 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004684 | 0.0 | AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002879690.2 | 0.0 | scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | D7LJW4 | 0.0 | D7LJW4_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_4001848 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | 345506 |
Entrez Gene | 9317591 |