PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 340538
Common NameARALYDRAFT_340538
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 282aa    MW: 30150.5 Da    PI: 8.0029
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
340538genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.27.6e-40511521101
  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
             +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael++++++l
  340538  51 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSVVQSQL 152
             7***********************9989**********************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.21650152IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-3951149IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MADQQRGHHT SDSRRKSLAG KRTSQQTPTP SLSSGGVAMA AATTGTGTAS PCGACKFLRR  60
KCVSGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI PVNRRHDAVV TISYEAQARL  120
SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQTHHQQ  180
QQQQLVVMQQ PEYSNNSSAS TTLAGAAMNS FTVAAEVAAV SYDVMAPTNL EHSLQPMPPH  240
QQRRGDQHED EEESGADFSV AVGSAAVASE AIFPADGYHR R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-40411531112LOB family transfactor Ramosa2.1
5ly0_B5e-40411531112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap340538
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738540.0AB473854.1 Arabidopsis thaliana ASL21 mRNA for ASYMMETRIC LEAVES2-like 21 protein, complete cds.
GenBankAK1182910.0AK118291.1 Arabidopsis thaliana At3g03760 mRNA for unknown protein, complete cds, clone: RAFL19-58-F13.
GenBankBT0085890.0BT008589.1 Arabidopsis thaliana clone U50874 unknown protein (At3g03760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882305.10.0LOB domain-containing protein 20
SwissprotQ9SRV31e-162LBD20_ARATH; LOB domain-containing protein 20
TrEMBLD7L1940.0D7L194_ARALL; LOB domain protein 20
STRINGfgenesh1_pg.C_scaffold_30003010.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-125LOB domain-containing protein 20