PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 339622 | ||||||||
Common Name | ARALYDRAFT_339622 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 633aa MW: 72789.2 Da PI: 4.8233 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0016 | 603 | 622 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C Cg+ F ++ L++H+ 339622 603 ECDRCGEEFESRTKLHKHLA 622 5*****************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46565 | 1.83E-22 | 6 | 109 | IPR001623 | DnaJ domain |
Gene3D | G3DSA:1.10.287.110 | 6.2E-23 | 8 | 80 | IPR001623 | DnaJ domain |
SMART | SM00271 | 6.8E-22 | 10 | 73 | IPR001623 | DnaJ domain |
CDD | cd06257 | 9.76E-16 | 11 | 70 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 19.308 | 11 | 81 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 2.8E-20 | 12 | 78 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.4E-14 | 13 | 31 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.4E-14 | 31 | 46 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.4E-14 | 53 | 73 | IPR001623 | DnaJ domain |
PROSITE pattern | PS00636 | 0 | 58 | 77 | IPR018253 | DnaJ domain, conserved site |
SuperFamily | SSF57667 | 8.48E-15 | 299 | 354 | No hit | No description |
SMART | SM00451 | 4.5E-8 | 309 | 343 | IPR003604 | Zinc finger, U1-type |
Pfam | PF12171 | 2.4E-10 | 311 | 337 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.73 | 312 | 336 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 314 | 336 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.723 | 602 | 631 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.2 | 602 | 626 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 604 | 626 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 633 aa Download sequence Send to blast |
MASSSRSEKR CHYEVLGISK ESSPDEIRSS YRRLALQRHP DKLMKAGGLS EAEATAQFQE 60 LVHAYEVLSD PKERAWYDSH RSQILFADHS SAGGSKSGGM PGGSVPDLFA FFTPTVYSGY 120 SDIGKGFYKV YYDVFNSVYL NEIKFARTLG LRMDSVREAP IMGNLESPYA QVTAFYNYWL 180 GFSTVMDFCW VDEYDVMAGP NRKSRRLMEE ENKKVRKKAK REYNETVRGL AEFVKKRDKR 240 VIDMMVKKNA EMEKKKEEER ERKKKMEKER LERAMNYEEP EWAKAQEGEE EGAGFNVLEE 300 EDDDAKRKNE QLYCIVCSKK FKSEKQWRNH EQSKKHKEKV AELRESFTDY EEEIEEEETD 360 GPLKPPESVE ELHEKLQEEL NIDDEENDVE DEVVGEADET DEEYFVAEED MKGSSESEDE 420 DDEMTLLKKM VSGQKKKRKN AVSKEEDEIE VEIESDTAEF SEVDYQKNTG RNKEAKEERN 480 KQNAGKDMAD DTSKVQVPGD DGNPDENVNA TDSASGAFED SQKDEANSME YDNRKSTGRR 540 RRSKKGKDKN NQGELMEKSS EADDTPYVNR DMEAQDYKKA PRSKKSTRGM KTKGTTKKNS 600 SNECDRCGEE FESRTKLHKH LADSGHATVK SR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1bq0_A | 9e-12 | 9 | 80 | 2 | 68 | DNAJ |
1xbl_A | 9e-12 | 9 | 80 | 2 | 68 | DNAJ |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 212 | 220 | KKVRKKAKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 339622 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC020579 | 0.0 | AC020579.5 Arabidopsis thaliana chromosome 1 BAC F1O17 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002887534.1 | 0.0 | DNAJ protein JJJ1 homolog | ||||
Swissprot | Q9C911 | 0.0 | JJJ1_ARATH; DNAJ protein JJJ1 homolog | ||||
TrEMBL | D7KS04 | 0.0 | D7KS04_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_2001721 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8869 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74250.1 | 0.0 | DNAJ heat shock N-terminal domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | 339622 |
Entrez Gene | 9323598 |