PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 339498
Common NameARALYDRAFT_339498
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-YA
Protein Properties Length: 336aa    MW: 37189.4 Da    PI: 9.4962
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
339498genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.7e-32176231258
  CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                ep++VNaKQy++I++RRq+Rakle+++kl +++rkpylheSRh hAl+RpRgsgGrF
     339498 176 EPVFVNAKQYHAIMRRRQQRAKLEAQNKL-IRARKPYLHESRHVHALKRPRGSGGRF 231
                9****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.5E-38173234IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.757174234IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.1E-27176231IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.8E-24177199IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860179199IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.8E-24208231IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MNKKDSATHS TLPYLNTSIS WGVVPTDSIV NRRVTTTESS LSLKMDARPE LLQTTKQISF  60
QDQDSSSTQS TGQSYTEVAT SEDDNPSRQI SFSAKSGSEA TQRKGFASNP KPGLMTGFPN  120
IHFAPAQANF SFHYADPHYG GLLAATYLPQ APTCNPQMVS MIPGRVPLPA ELTETEPVFV  180
NAKQYHAIMR RRQQRAKLEA QNKLIRARKP YLHESRHVHA LKRPRGSGGR FLNTKKLLQE  240
AEQAAREQEN DKSDQQENRK TNMSRFEAHM LHSKDLGSTT SGSDITSISD GADLFGHTEF  300
QFSGFSTQTN RAMLVHGQSN DMHGGGDMHH FSVHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-19176235362NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap339498
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1400280.0AY140028.1 Arabidopsis thaliana CCAAT-binding factor B subunit-like protein, putative (At1g72830) mRNA, complete cds.
GenBankBT0088250.0BT008825.1 Arabidopsis thaliana At1g72830 mRNA, complete cds.
GenBankY137220.0Y13722.1 Arabidopsis thaliana mRNA for Hap2c transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888894.20.0nuclear transcription factor Y subunit A-3
SwissprotQ93ZH20.0NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLD7KR420.0D7KR42_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_20015970.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.10.0nuclear factor Y, subunit A3