PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 338390 | ||||||||
Common Name | ARALYDRAFT_338390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 214aa MW: 24115.9 Da PI: 6.222 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.1 | 3.5e-11 | 26 | 63 | 13 | 50 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 f +R g KKA ELSvLC+ v i +++++ l+ ++ 338390 26 FKQRFPGFKKKATELSVLCGNSVGFICYGPDNDLHVWP 63 777888999****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 6.41E-14 | 19 | 98 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.57E-19 | 19 | 94 | No hit | No description |
PROSITE profile | PS50066 | 11.059 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-10 | 19 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAPRDKKPNK SCDDDDLQRK KKQNFFKQRF PGFKKKATEL SVLCGNSVGF ICYGPDNDLH 60 VWPQPQDHNP QTLTQIVAKF NALSDHKRKH HACDLYDFPN LKGLSGDQLR NHLVNLDSHL 120 VGVKQHKINS SLLDPFTLGF SGHDYFLADS MAVTDNWEVC ANNGVWDPSW LDFDFSSTLF 180 TDDWTVSGYN PLLAATDSFT YETPVTDNLG SVF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 338390 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020890320.1 | 1e-103 | agamous-like MADS-box protein AGL49 | ||||
Swissprot | Q9ZUI9 | 5e-66 | AGL49_ARATH; Agamous-like MADS-box protein AGL49 | ||||
TrEMBL | D7KXQ5 | 1e-156 | D7KXQ5_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_2000489 | 1e-157 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11232 | 9 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G60040.1 | 6e-59 | AGAMOUS-like 49 |
Link Out ? help Back to Top | |
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Phytozome | 338390 |
Entrez Gene | 9322724 |
Publications ? help Back to Top | |||
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