PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 336533
Common NameARALYDRAFT_336533
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-X1
Protein Properties Length: 1334aa    MW: 147284 Da    PI: 8.3485
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
336533genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X122.32.9e-07327345119
  zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
               CG+H+C++ CH G C+pC+
    336533 327 CGRHRCERACHVGACDPCQ 345
               ******************6 PP
2zf-NF-X117.11.2e-05548566119
  zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
               CG+H+C+ lCH+G CppC 
    336533 548 CGQHSCETLCHTGHCPPCL 566
               ******************6 PP
3zf-NF-X116.12.4e-05658673116
  zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
               CG+H C + CH +pC+
    336533 658 CGMHACARACHSKPCD 673
               ***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578504.77E-6149220No hitNo description
PROSITE profilePS500168.849157218IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.716160216IPR001841Zinc finger, RING-type
PROSITE patternPS013590160215IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.45E-6249310No hitNo description
SMARTSM004380.023272290IPR000967Zinc finger, NF-X1-type
PfamPF0142210274289IPR000967Zinc finger, NF-X1-type
CDDcd060083.80E-12317365No hitNo description
SMARTSM004383.2E-4327346IPR000967Zinc finger, NF-X1-type
PfamPF014221.7E-5327344IPR000967Zinc finger, NF-X1-type
CDDcd060083.76E-8381426No hitNo description
SMARTSM004380.002391410IPR000967Zinc finger, NF-X1-type
PfamPF014221.5E-4391408IPR000967Zinc finger, NF-X1-type
CDDcd060081.53E-13439487No hitNo description
SMARTSM004380.0091449468IPR000967Zinc finger, NF-X1-type
PfamPF014220.0025449466IPR000967Zinc finger, NF-X1-type
SMARTSM0043897507544IPR000967Zinc finger, NF-X1-type
PfamPF0142224507518IPR000967Zinc finger, NF-X1-type
CDDcd060085.38E-9541590No hitNo description
SMARTSM004380.0038548567IPR000967Zinc finger, NF-X1-type
PfamPF014227.5E-4548565IPR000967Zinc finger, NF-X1-type
CDDcd060081.03E-6595642No hitNo description
SMARTSM004380.13605623IPR000967Zinc finger, NF-X1-type
SMARTSM004380.067658689IPR000967Zinc finger, NF-X1-type
PfamPF014220.041658673IPR000967Zinc finger, NF-X1-type
CDDcd060084.77E-5687736No hitNo description
PfamPF0142216691717IPR000967Zinc finger, NF-X1-type
SMARTSM004380.039698719IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3307.6E-4939991IPR012677Nucleotide-binding alpha-beta plait domain
PfamPF142991.6E-1711431327IPR025886Phloem protein 2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1334 aa     Download sequence    Send to blast
MSSQVRRDRR ERQRFTPQTT QQTWVPRGTS STSVVVNETT FPFDANTNFG SLDAGARPGP  60
VYQQRQHYES GPLLNNPQQR SNVLGPPPFN RQRRNNGSRT VPDNRQRGGS RGRLVQTVNE  120
GTGLDKERSG HKENTVLTNP NLPQLLQEIQ DKLMKGSIEC MICYDMVRRS ANIWSCSSCY  180
SIFHLNCIKK WARAPTSVDL LADKNQGSNW RCPGCQFVQL TSSKDIQYRC FCGKRKDPPS  240
DPYLTPHSCG DICGKPLEKE FATAAMANEN TCPHVCVLQC HPGPCPPCKA FAPPRNCPCG  300
KKMIRTRCSE RKSNHTCGQS CDKLLYCGRH RCERACHVGA CDPCQVQVNA SCFCKQTVES  360
VICGDMNVKG EVKAEDGVFS CKLNCRKQLE CGNHYCRDVC HPGPCGDCEF LPSRIKSCYC  420
GKTSLEEERR SCLDPIPSCS NICSKFLPCG LHNCKEMCHS GGCSPCLVQV RQKCRCGSTS  480
RTVECYKTVL ETEKFICAKP CGRKKNCGRH RCNERCCPLL NHPKNDDLSG DFFDLHFCHI  540
PCGKRLRCGQ HSCETLCHTG HCPPCLEMIF TDLACACGKT SIPPPLPCGT PVPSCQLPCS  600
VPQPCGHSAT HGCHFGDCMP CSVPMEKKCI GGHVVLRNIP CGLKDIRCNK ICGKTRCCGM  660
HACARACHSK PCDNGGNASV TGLRVTCGQT CGAPRRDCRH TCAALCHPSA PCPDQRCEFP  720
LKIACSCGRI TATIPCDVGG SAGGFSGDSI YETSILQKLP VPLQPVESNG NRIPLGQRKL  780
TCDEECAKVE RKRVLQDAFD ITPPSLDALH FDENTAMTEI ISDLYRRDPK WVLAVEERCK  840
FLVLGKARGS TSSSLKLHIF CTMEKDKRDA VRLIAERWKL AVSNAGWEPK RFAVVYVTQK  900
SKPPTRIIGV KGVASAGGPH APAFDPLVDM DPRLVVCFSD LPREANISAL VLRFGGECEL  960
VWLNDKNALA VFHDPLRAAT AMRRLEHGSA YQGAVVVVQN QGQSPSLSNA WGIPGSSVKR  1020
GNPWHKAVIK ESDDSWGIED SPIGGSMLKS AKDNALITPL VNRWSVLESD KTVSVEPLAQ  1080
TEGTSSSKAA GKEPEETAVV DDWEKIKSNK LSIYALPFVG HSSIFYNFVS PTKEKSGFWS  1140
NRKAWILQPS GLNFVWGGDS RYWVIPKEPR CLPIHFDLTD KPNFGLTDTK SLKLIHLIVG  1200
FRMPAELKMV SWLEVTGCFE KIEPAKTYRI GFKISFKTDA TGWDEAPLFM SAKIGKKGKT  1260
VWKRIKSVNQ NFGKLIDGSE PINIPDESDG QFEISVSPAS LNQDTMLQFG LYEVWTGRWK  1320
TGLLIHEAFV HEV*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap336533
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866977.10.0NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLD7KK970.0D7KK97_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_10030980.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1