PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 336503
Common NameARALYDRAFT_336503
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARF
Protein Properties Length: 579aa    MW: 65570.8 Da    PI: 8.741
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
336503genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.2e-2384185199
             EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
             f kvlt sd++++g +++p+k a e+     ++++   ++l   d++g++W++k++yr++++r++lt+GW+ F  +++L +gD++vF   + +++el+v+++r
  336503  84 FTKVLTASDTSAHGGFSVPRKLAIEClppldMSQPLPAQELLTIDLHGNQWRFKHSYRGTPRRHLLTTGWNAFITSKKLVAGDVIVFL--RGETGELRVSIRR 184
             89****************************9666666679999*********************************************..449999*****99 PP

             S CS
      B3  99 k 99 
             +
  336503 185 A 185
             7 PP
2Auxin_resp88.89.8e-30210299183
  Auxin_resp   1 aahaastksvFevvYnPr........astseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a ha++++++F vvY+Pr          +s+F+v+++k+++a+++k+ vG+Rf m+fe+e++serr+ Gt++gvsd++p +W+ S+WrsLk
      336503 210 AKHAFDNQCMFIVVYKPRfifcvcisIRSSQFIVNYDKFLDAVNNKFNVGSRFTMRFEEENFSERRYFGTIIGVSDFSP-HWKCSEWRSLK 299
                 6899*************955444444479**************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.6E-3774197IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-3281206IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-2183184No hitNo description
PfamPF023621.9E-2084185IPR003340B3 DNA binding domain
PROSITE profilePS5086313.6984186IPR003340B3 DNA binding domain
SMARTSM010193.4E-2184186IPR003340B3 DNA binding domain
PfamPF065074.2E-25210299IPR010525Auxin response factor
PfamPF023094.3E-5477519IPR033389AUX/IAA domain
SuperFamilySSF542771.96E-10480559No hitNo description
PROSITE profilePS5174523.182483566IPR000270PB1 domain
PfamPF023092.2E-5524564IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MTLGLRGSNK IFYALDGTHH TISHTLPCKA KQPPPLQRRV IAIQLKVERN SDETYAEITL  60
MPNTTQVVIP TQNENQFRPL VNSFTKVLTA SDTSAHGGFS VPRKLAIECL PPLDMSQPLP  120
AQELLTIDLH GNQWRFKHSY RGTPRRHLLT TGWNAFITSK KLVAGDVIVF LRGETGELRV  180
SIRRARYQQG NIPSSLISIE SMRHGVIASA KHAFDNQCMF IVVYKPRFIF CVCISIRSSQ  240
FIVNYDKFLD AVNNKFNVGS RFTMRFEEEN FSERRYFGTI IGVSDFSPHW KCSEWRSLKV  300
QWDEFASFPR PDKVSPWEIK HSTPSSNVLP SSMLKNKRSR EFNEIGSSSS HLLPPILTQG  360
QEIGQPSMTS PMNVPLSYRD AIEDDSTPSR LLMSYSVQTM PRLNYNNDQI VTPIEGNITN  420
NGGASCRVFG VSLATPPVIK DPIEQIDSDP NLEISKLSQE KIFGLGQMRS TREIQSKQLS  480
STRTCTKVQM HGVTLGRALD LSVLNGYDQL ILELEKLFDL KGQLQNRNQW EIVFTDNEED  540
EMLVGDDPWP EFCNMVKKII IYSKEEVKNF KSGNSRSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-94632036353Auxin response factor 1
4ldw_A2e-94632036353Auxin response factor 1
4ldw_B2e-94632036353Auxin response factor 1
4ldx_A2e-94632036353Auxin response factor 1
4ldx_B2e-94632036353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap336503
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6697960.0AY669796.1 Arabidopsis thaliana clone C105354 ARF22 (At1g34390) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866118.10.0LOW QUALITY PROTEIN: putative auxin response factor 14
SwissprotQ9LQE80.0ARFN_ARATH; Putative auxin response factor 14
TrEMBLD7KK630.0D7KK63_ARALL; Auxin response factor
STRINGfgenesh1_pg.C_scaffold_10030680.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12276731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35540.10.0auxin response factor 14