PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 335722
Common NameARALYDRAFT_335722
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 357aa    MW: 41070.7 Da    PI: 6.9664
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
335722genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.84e-1695140147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v  +G+ +W++Ia++++ gR++k+c++rw++ 
           335722  95 RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 140
                      899*****************************.***********996 PP
2Myb_DNA-binding59.48.1e-19147191147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++++k++w+ +
           335722 147 RRAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNSVKNHWHVV 191
                      678*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5890141IPR017930Myb domain
SMARTSM007176.5E-1494143IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-2895188IPR009057Homeodomain-like
PfamPF002491.2E-1595140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-2696148IPR009057Homeodomain-like
CDDcd001674.36E-1298139No hitNo description
PROSITE profilePS5129428.155142196IPR017930Myb domain
SMARTSM007172.4E-15146194IPR001005SANT/Myb domain
PfamPF002491.3E-15147190IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-21149195IPR009057Homeodomain-like
CDDcd001671.22E-11149192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MFITEKQVWM DEIAARRASS SWDFPFNDNN IHRRHCNTSH EFEILKSPSG DVAANEEESN  60
NHNPNFSNSE SGKKETTDSG QSWSSSSSKP SVLGRGHWRP AEDVKLKELV SIYGPQNWNL  120
IAEKLQGRSG KSCRLRWFNQ LDPRINRRAF TEEEEERLMQ AHRLYGNKWA MIARLFPGRT  180
DNSVKNHWHV VMARKYREHS SAYRRRKLMS NNPLKPHLTD NHHPNPNPNY HSFISTNHYF  240
AQPFPEFNLT HHLVNNAPIT SDHNQLVLPF HCFQGYESNE PPMVVSMFGN QMMVGDNVGD  300
TSDALCNFPY IDPRSQEKAE PNEAMHLIGM EAVDEEVVEK AKQQPHFFDF LGLGTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31931955107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning (PubMed:19542355, PubMed:21533201). Functions in both lateral organ separation and axillary meristem formation, in part through genetic interaction with the NAC domain genes CUC2 and CUC3 and the homeobox gene STM (PubMed:19542355). May be recruited by a variety of developmental programs for the development of floral organs and the initiation of ovule outgrowth (PubMed:21533201). {ECO:0000269|PubMed:19542355, ECO:0000269|PubMed:21533201}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap335722
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3348160.0AF334816.1 Arabidopsis thaliana putative transcription factor (MYB117) mRNA, complete cds.
GenBankAY5195590.0AY519559.1 Arabidopsis thaliana MYB transcription factor (At1g26780) mRNA, complete cds.
GenBankDQ4462910.0DQ446291.1 Arabidopsis thaliana clone pENTR221-At1g26780 myb family transcription factor (At1g26780) mRNA, complete cds.
GenBankDQ6528620.0DQ652862.1 Arabidopsis thaliana clone 0000017266_0000012084 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893381.10.0transcription factor MYB117
SwissprotQ9LQX50.0MY117_ARATH; Transcription factor MYB117
TrEMBLD7KQL70.0D7KQL7_ARALL; T24P13.16
STRINGfgenesh1_pg.C_scaffold_10022870.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.20.0myb domain protein 117
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Colling J, et al.
    Hypersensitivity of Arabidopsis TAXIMIN1 overexpression lines to light stress is correlated with decreased sinapoyl malate abundance and countered by the antibiotic cefotaxime.
    Plant Signal Behav, 2016. 11(4): p. e1143998
    [PMID:26967827]