PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 334119
Common NameARALYDRAFT_334119
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 331aa    MW: 37870.3 Da    PI: 9.0739
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
334119genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-05173192120
              EEETTTTEEESSHHHHHHHH CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
              + C++C+k+F+r  n++ H+
   334119 173 FACSICSKTFNRYNNMQMHM 192
              78*****************9 PP
2zf-C2H2110.0014258280123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++C++Cgk    k + ++H +++
   334119 258 FSCGKCGKALAVKGDWRTHEKNC 280
              89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.61E-9152196No hitNo description
PROSITE profilePS5015710.45173200IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-5173192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17173195IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
SMARTSM00355170221253IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.79E-5243278No hitNo description
Gene3DG3DSA:3.30.160.609.0E-4244278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355190258278IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.538278311IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSLMNPYKKV LSFESPSFIE WLKPPSSTSS QSILYRMKTR DAISRSNHHQ SQMNMLEPLN  60
TSIQCLPLLN KLMENKSRQA LDDIKEENKD DVVTLQIGFP KYHRGSSDDD SDTTFDHQKK  120
PIKREIIEDG VVMMKKRRKM KFDEEITDSD VEVCGKRFWI PSPAQIHVGP MQFACSICSK  180
TFNRYNNMQM HMWGHGSEFR KGADSLKGTT QPAAILRLPC YCCAEGCKNN INHPRSKPLK  240
DFRTLQTHYK RKHGSKPFSC GKCGKALAVK GDWRTHEKNC GKLWYCTCGS DFKHKRSLKD  300
HIRSFGSGHS PLPSLSFDSF EEDTECVTTE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134138KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap334119
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544480.0AF254448.1 Arabidopsis thaliana WIP3 protein (WIP3) mRNA, complete cds.
GenBankAK1188510.0AK118851.1 Arabidopsis thaliana At1g08290 mRNA for unknown protein, complete cds, clone: RAFL21-18-A22.
GenBankAY0909180.0AY090918.1 Arabidopsis thaliana unknown protein (At1g08290) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892452.10.0zinc finger protein WIP3
SwissprotQ9SGD10.0ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLD7KI090.0D7KI09_ARALL; Zinc finger protein
STRINGfgenesh1_pg.C_scaffold_10006840.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.10.0WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]