PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 333922 | ||||||||
Common Name | ARALYDRAFT_333922 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 422aa MW: 47346 Da PI: 5.3018 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.7 | 1.4e-10 | 221 | 262 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR + +++f L+ l+P++ +K++ a+i+ +A++YIk+L 333922 221 TERERRVHFKDRFGDLKNLIPNP-----TKNDRASIVGEAIDYIKEL 262 6**********************.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.11E-10 | 211 | 264 | No hit | No description |
SuperFamily | SSF47459 | 2.82E-12 | 212 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-10 | 212 | 277 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.999 | 213 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.4E-7 | 219 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.6E-8 | 221 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MEGGGMFEEI GCFDPNAPAE MTAESSFSPA EPPPTITVIG SNSNSNCSLE DLSEFHLSPQ 60 DSSLPASASA YVHQLHVNAT PNCDHQFQSS MHQTLQGPSY PQQSNNWDNG YQDFVNLVPN 120 HTTPDLLSLL QLPRSSLPPF ANPSLQDIIM TTSSSVAAYD PLFHLNFPLQ PPNGTFIGVD 180 QDQTEIENQG VNLMYDEENN NLDNGLNRKG RGSRKRKVFP TERERRVHFK DRFGDLKNLI 240 PNPTKNDRAS IVGEAIDYIK ELLRTIDEFK LLVEKKRTKQ RNREGDDVID ENFKAQSEVV 300 EQCLINKKNN ALRCSWLKRK SKFTEVDVRI IDDDVTIKIV QKKKINCLVF VSKVVDQLQL 360 DLHHVAGAQI GEHHSFLFNA KICEGSSVYA SAIADRVMEV LEKQYMEALS TNNGYHCYSS 420 D* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 333922 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488619 | 0.0 | AF488619.1 Arabidopsis thaliana clone bHLH089 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | BT004262 | 0.0 | BT004262.1 Arabidopsis thaliana clone RAFL15-18-B21 (R20806) putative bHLH protein (At1g06170) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002892324.1 | 0.0 | transcription factor bHLH89 | ||||
Refseq | XP_020870756.1 | 0.0 | transcription factor bHLH89 | ||||
Swissprot | Q9LND0 | 0.0 | BH089_ARATH; Transcription factor bHLH89 | ||||
TrEMBL | D7KFB6 | 0.0 | D7KFB6_ARALL; Basic helix-loop-helix family protein | ||||
STRING | fgenesh1_pg.C_scaffold_1000487 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1355 | 26 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06170.2 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 333922 |
Entrez Gene | 9325653 |
Publications ? help Back to Top | |||
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