PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 333455
Common NameARALYDRAFT_333455
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 873aa    MW: 97151 Da    PI: 7.2577
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
333455genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011527123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             +kC+ C ksF +   L  H+r+H
   333455  5 HKCKLCWKSFANGRALGGHMRSH 27
             79********************9 PP
2zf-C2H211.60.00083136158123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++C+ C k+F++   L  H  +H
   333455 136 FECETCEKVFKSYQALGEHRASH 158
              89*****************9988 PP
3zf-C2H213.60.0002183205123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++Cp+C+k+Fs+   L  H r+H
   333455 183 HECPICSKVFSSGQALGGHKRSH 205
              79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.7E-6428IPR007087Zinc finger, C2H2
SuperFamilySSF576671.77E-8427No hitNo description
SMARTSM003550.02527IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743527IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576671.77E-8131158No hitNo description
PROSITE profilePS5015711.011136163IPR007087Zinc finger, C2H2
PfamPF139122.8E-10136160IPR007087Zinc finger, C2H2
SMARTSM003550.016136158IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
PfamPF139121.7E-12182205IPR007087Zinc finger, C2H2
SMARTSM003550.014183205IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45183210IPR007087Zinc finger, C2H2
PROSITE patternPS000280185205IPR007087Zinc finger, C2H2
SuperFamilySSF554697.46E-11374528IPR000415Nitroreductase-like
PfamPF008811.4E-8374524IPR029479Nitroreductase
Gene3DG3DSA:3.40.109.109.7E-8375526IPR000415Nitroreductase-like
CDDcd021421.00E-27376525No hitNo description
CDDcd021421.60E-32693851No hitNo description
SuperFamilySSF554693.8E-10716729IPR000415Nitroreductase-like
Gene3DG3DSA:3.40.109.103.4E-7716729IPR000415Nitroreductase-like
SuperFamilySSF554693.8E-10764858IPR000415Nitroreductase-like
Gene3DG3DSA:3.40.109.103.4E-7764855IPR000415Nitroreductase-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0009507Cellular Componentchloroplast
GO:0016491Molecular Functionoxidoreductase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    Send to blast
MEERHKCKLC WKSFANGRAL GGHMRSHMLP SQPESASSSM ADPLQDRESE TESSKKPTRK  60
RSRLNRRSNE EGKSETAGAA EVKIGVQELS ESCTEQEPMS SVCDAATEEE DVALSLMLLS  120
RDKWEKEERG KNNKWFECET CEKVFKSYQA LGEHRASHRK RRAETDQLVS DELKKKKKKT  180
SHHECPICSK VFSSGQALGG HKRSHASASN DESTIRRSGI IISLIDLNLP APSEEEDMAS  240
SRLIRLLSRR DVVKEHKKSK GEGRMTISWR LASSTSLLSI HRTPTSAFIS AMTFSSSSSS  300
SSLELVLEYH NQTKHSFTGY ARGPRGLDWA NQPNPFRRYL SAPLLPLQHP NHDDDDNDDS  360
PLYSCLFDSL PPPKPISLAT ISHLFYHSLA LSAWKTTGSS TWPLRVNPSS GNLHPTEAYL  420
IAPPIPSLSQ SAFVAHYAPK EHSLEVRAHI PSSFFPENSF LIGISSIFWR EAWKYGERAF  480
RYCNHDVGHA IAALSIAAAE LGWDLKLLDG FGADDLKRLM GLPEFQIPSS SGKGKLPEIE  540
FEHPDCLLLV FPNGTSRGDL NLDYLGISSA LRDFPSLEWN GNPNTLSKEH LCWDIIYRTA  600
KAVEKPSLIY STSSSFDAPF TSSALFSHTS YNKLTARQVV RTRRSAVDMD AVTCIDMSAF  660
YQILMHCLPS GSTRGEPQKE QLALPFRALP WDTAEVHLAL FVHRVLGLPK GLYFLVRNED  720
HLSDLKTATR PEFEWKKPDG CPADLPLYKL TEGDCQKLAK GLSCHQDIAG DGCFSLGMVA  780
RFEPALREKG SWVYPRLFWE TGVIGQVLYL EAHAMGISAT GIGCYFDDPV HEVLGIKDSS  840
FQSLYHFTVG GPVVDKRIMT LPAYPGPTTT VA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159178KRRAETDQLVSDELKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap333455
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0700570.0AY070057.1 Arabidopsis thaliana unknown protein (At1g02020) mRNA, complete cds.
GenBankAY1229870.0AY122987.1 Arabidopsis thaliana unknown protein (At1g02020) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868113.10.0uncharacterized protein LOC9325405 isoform X1
TrEMBLD7KP500.0D7KP50_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_10000200.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.11e-122C2H2-like zinc finger protein