PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 332832
Common NameARALYDRAFT_332832
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 433aa    MW: 48373.2 Da    PI: 4.9883
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
332832genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.11.5e-96314212373
    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel.ykalppsetseknsseelaalkl..fsevsPilkfshltaNqa 101
             ++lLl+cA+a++s+d++laq++++ l++laspdgd++qRla+ f++AL +r a++++   + +l+++++ ++++ +++++ +l  f++++P+++f++++aN a
  332832  31 EQLLLHCAKAIESNDATLAQQIIWVLNNLASPDGDSTQRLASSFLRALISRAASKSPAFaFLSLAATASVSQKMLHRFSVIELaeFVDLTPWHRFGFIAANAA 133
             79***************************************************95554414455666666666888888888899****************** PP

    GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvl...vakrledleleeL 194
             Il+aveg + vHi+D+++++++Q p+L++++a++   ++pp l++T+++s +++        ++ee+g++L +fA++ ++ +ef+++   +++ l++l +e+L
  332832 134 ILDAVEGYSSVHIVDLSLTHCMQIPTLIDSMANKLhkQPPPLLKLTVIASDAEShppplLGISYEELGSKLVNFATTRNIAMEFRIIsssYSDGLSSL-IEQL 235
             ********************************988778899********987777888888999**********************966555566666.9*** PP

    GRAS 195 rvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
             r++p   +Eal+Vn++++lh+++de+++++  r+ +Lk +++l+P++v+++++++d +s++F  r+ +  +y++  +++ ++ l r se+r+++E+  ++++i
  332832 236 RIDPfvfNEALVVNCHMMLHYIPDETLTSNPLRSVLLKELRDLNPTIVTLIDEDSDFTSTNFISRLRSLYNYMWIPYETADMFLTRGSEHRQWYEAD-ISWKI 337
             *************************************************************************************************.***** PP

    GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve....eesgslvlgWkdrpLvsvSaW 373
              n+va+egaer+er e +++W er++ea F  v ++e+a +++k++l++++ ++g++ +    ++ + +vl+Wk++++v++SaW
  332832 338 DNIVAKEGAERVERLELKSRWFERMREAKFAGVGFGERAGTEVKTMLEEHAtGWGMKEDveddDDVERFVLTWKGHSVVFASAW 421
             ***************************************************8888765443333367899************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.6934397IPR005202Transcription factor GRAS
PfamPF035145.2E-9431421IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MNTTQIINPT RPIWPGFSSS KSLCGDANCM EQLLLHCAKA IESNDATLAQ QIIWVLNNLA  60
SPDGDSTQRL ASSFLRALIS RAASKSPAFA FLSLAATASV SQKMLHRFSV IELAEFVDLT  120
PWHRFGFIAA NAAILDAVEG YSSVHIVDLS LTHCMQIPTL IDSMANKLHK QPPPLLKLTV  180
IASDAESHPP PLLGISYEEL GSKLVNFATT RNIAMEFRII SSSYSDGLSS LIEQLRIDPF  240
VFNEALVVNC HMMLHYIPDE TLTSNPLRSV LLKELRDLNP TIVTLIDEDS DFTSTNFISR  300
LRSLYNYMWI PYETADMFLT RGSEHRQWYE ADISWKIDNI VAKEGAERVE RLELKSRWFE  360
RMREAKFAGV GFGERAGTEV KTMLEEHATG WGMKEDVEDD DDVERFVLTW KGHSVVFASA  420
WAPINGVAAD LI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B3e-511542318420Protein SHORT-ROOT
5b3h_E3e-511542318420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap332832
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076450.0AB007645.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8K14.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865003.20.0scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLD7MUQ80.0D7MUQ8_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_80021750.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-179GRAS family protein