PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

331662

Common Name

ARALYDRAFT_331662

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 255aa MW: 29691.8 Da PI: 7.6259

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
331662	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.8	6.8e-26	143	193	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++++++++++F+ pi AAkeL+v+lTvLK++CR++GI RWPhRk+ksl 331662 143 QDKLEMSEIKQFFDRPIMRAAKELNVGLTVLKKRCRELGIYRWPHRKLKSL 193 6799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.666	129	214	IPR003035	RWP-RK domain
Pfam	PF02042	2.0E-21	146	193	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MSSSKHSSVF NYSALFLSLI LQQMDHNSLH QLDSPKIENQ YEPDSLYDML EKLPPLETLL 60 DTEDLKPNAG LHFQFQYNSF DDFFENIEVD ITIPSDVHLL TQEPYFSSGS SSPLAIQNDC 120 LSSDERVEKR TVKKKRNLKK KRQDKLEMSE IKQFFDRPIM RAAKELNVGL TVLKKRCREL 180 GIYRWPHRKL KSLNSLIKNL KSVGMEEEVK NLEEHRVLIE QEPDAELSDG TKKLRQACFK 240 ANYKRRKSLG DDYY*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	331662

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB018116	1e-151	AB018116.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNB8.
GenBank	CP002688	1e-151	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002865951.2	0.0	protein RKD4
Swissprot	Q9LVU8	1e-152	RKD4_ARATH; Protein RKD4
TrEMBL	D7MSC7	0.0	D7MSC7_ARALL; RWP-RK domain-containing protein
STRING	fgenesh1_pm.C_scaffold_8001005	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-139	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	331662
Entrez Gene	9300291

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]