PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 328525 | ||||||||
Common Name | ARALYDRAFT_328525 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TALE | ||||||||
Protein Properties | Length: 380aa MW: 42900.2 Da PI: 6.3485 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.7 | 8.2e-08 | 327 | 360 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + 328525 327 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 360 569*****************************87 PP | |||||||
2 | ELK | 26.8 | 1.2e-09 | 281 | 302 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++++++++++++E++ 328525 281 ELKHELKQGFKEKIVDIREEIM 302 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.1E-19 | 116 | 160 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.7E-17 | 118 | 159 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.0E-26 | 167 | 222 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.4E-19 | 171 | 221 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.446 | 281 | 301 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.9E-6 | 281 | 302 | IPR005539 | ELK domain |
SMART | SM01188 | 6.2E-4 | 281 | 302 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.985 | 301 | 364 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.0E-10 | 303 | 368 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.63E-15 | 303 | 367 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.15E-11 | 304 | 360 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-25 | 308 | 366 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.7E-17 | 321 | 360 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009727 | Biological Process | detection of ethylene stimulus | ||||
GO:0071369 | Biological Process | cellular response to ethylene stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MSFNSSHLLP PQEDLPLRHF ADQSQQPPSQ RHFSETPSLV TASFLNLPST ITTADSDLAP 60 PHRNGDNSVA DTNPRWLSFH TEMQNTGEVR SEVIDGVNAD GETILGVVGG EDWRSASYKA 120 AILRHPMYEQ LLAAHVACLR VATPVDQIPR IDAQLSQLHT VAAKYSTLGV VVDNKELDHF 180 MSHYVVLLCS FKEQLQHHVC VHAMEAITAC WEIEQSLQSL TGVSPSESNG KTMSEDEDDN 240 QVESEVNMYD GSLDGSDCLM GFGPLVPTER ERSLMERVKK ELKHELKQGF KEKIVDIREE 300 IMRKRRAGKL PGDTTSVLKE WWRTHSKWPY PTEEDKAKLV QETGLQLKQI NNWFINQRKR 360 NWNSNSSTSS TLTKNKRKR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 357 | 378 | RKRNWNSNSSTSSTLTKNKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 328525 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF306661 | 0.0 | AF306661.1 Arabidopsis thaliana homeodomain transcription factor KNAT5 (KNAT5) mRNA, complete cds. | |||
GenBank | BT026033 | 0.0 | BT026033.1 Arabidopsis thaliana At4g32040 mRNA, complete cds. | |||
GenBank | D43962 | 0.0 | D43962.1 Arabidopsis thaliana mRNA for homeodomein containing protein 1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002869296.2 | 0.0 | homeobox protein knotted-1-like 5 | ||||
Swissprot | P48002 | 0.0 | KNAT5_ARATH; Homeobox protein knotted-1-like 5 | ||||
TrEMBL | D7MAS6 | 0.0 | D7MAS6_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_7000752 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32040.1 | 0.0 | KNOTTED1-like homeobox gene 5 |
Link Out ? help Back to Top | |
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Phytozome | 328525 |
Entrez Gene | 9305367 |