PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

328182

Common Name

ARALYDRAFT_328182

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 278aa MW: 28677.8 Da PI: 4.6058

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
328182	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	145	165	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk F ++ H+r H 328182 145 CNVCGKGFASWKAVFGHLRQH 165 *******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.84E-5	130	166	No hit	No description
PROSITE pattern	PS00028	0	145	165	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048235	Biological Process	pollen sperm cell differentiation
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MSNPEKSKIN EEDIIENSDE SDYLWSDEEG EIREIVLALP ALRLSESLHV DETIRNEAAA 60 AANLIVAAVE EAAGKTDQIA SGIGNASGTP NSKKIGRPRV LLEAEAAASG STAIGTTSTE 120 REVVKKPRRK GSTQLTHLPQ GPPMCNVCGK GFASWKAVFG HLRQHKDRGY LGFLPPPTFN 180 AAEEGFGGVA TVSSAVGVAT ASSAVGVAIA SSGGGVATAC AAGGVATSSS AGTGAVGIDL 240 NKDPIEEEDK APGPKRKFDL NRSPPQDDEE EKDEKAE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	328182

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872242.1	1e-179	uncharacterized protein LOC9303133
TrEMBL	D7MC52	0.0	D7MC52_ARALL; Uncharacterized protein
STRING	fgenesh1_pm.C_scaffold_7000409	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5875	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35700.1	1e-84	C2H2 family protein

Link Out ? help Back to Top
Phytozome	328182
Entrez Gene	9303133