PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 328110 | ||||||||
Common Name | ARALYDRAFT_328110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 224aa MW: 25614.1 Da PI: 9.4671 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.5 | 1.3e-21 | 15 | 62 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + +n+sn qvtfskR g++KKA+EL++LC+ae+++i+fs+ gk++ + 328110 15 KMKNESNLQVTFSKRSFGLFKKASELCTLCGAEILMIVFSPGGKVFSF 62 679******************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.193 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.0E-32 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.10E-36 | 7 | 81 | No hit | No description |
SuperFamily | SSF55455 | 1.7E-26 | 7 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-19 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.4E-23 | 15 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-19 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-19 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MVRSTKGRQK IEMKKMKNES NLQVTFSKRS FGLFKKASEL CTLCGAEILM IVFSPGGKVF 60 SFGHPSVQDL IHRFENPNYN SIIVLTTQEK EKNKRMVLDI MKESREQRGN WYEKDVKDLD 120 MNETNHLISA LQDVKKKLVS EMSQQYSQVN VSQNYFGQSS GFIGGPNVDV GIDLFDQRRN 180 TFNYNPNMAV FPNHTPMFGY NNDGVIVPIS NMNYMSSYNF NQS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 328110 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL161589 | 1e-149 | AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85. | |||
GenBank | AY141234 | 1e-149 | AY141234.1 Arabidopsis thaliana MADS-box protein AGL40 mRNA, complete cds. | |||
GenBank | CP002687 | 1e-149 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | Z99708 | 1e-149 | Z99708.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020875559.1 | 1e-161 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 7e-56 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | D7MBG3 | 1e-165 | D7MBG3_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_7000337 | 1e-165 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14294 | 10 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 1e-109 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | 328110 |
Entrez Gene | 9305101 |
Publications ? help Back to Top | |||
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