PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 328081
Common NameARALYDRAFT_328081
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 727aa    MW: 80036 Da    PI: 6.6502
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
328081genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.5e-095085451954
               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
  Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
               Fe   ++yps +++  LA+++gL+ +qV++WF N R +
    328081 508 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 545
               664459******************************88 PP
2BELL122.32e-39366437172
    BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
             +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+
  328081 366 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIVMGHGAALPYTALAQKAMSRHFRCLKDAVAAQL 437
             589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-78296435IPR006563POX domain
PfamPF075261.5E-49301434IPR006563POX domain
PROSITE profilePS5007112.568486549IPR001356Homeobox domain
CDDcd000862.75E-12489550No hitNo description
SMARTSM003891.2E-9489553IPR001356Homeobox domain
SuperFamilySSF466893.29E-17491556IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-29492555IPR009057Homeodomain-like
PfamPF059203.6E-18506545IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MGIAKTSPTT TTLLKTLHNN SMSQDYHQGG IFNFSNGFDR SDSPNLTTQQ KQEHQRVEMD  60
EEPSVAGGRI PVYESAGMLS EMFNFPGSSG GGRDLDHGQS FRSNRQLLEE QHQNIPAMNA  120
TDSATATAAA MQLFLMNPPP PQQPPSPSST TTTRSHPNSS TLHMLLPNPS TNTTHHQGYT  180
NHMSMHQLPH QHHQQMTWQY SSSSDHHHHN NSQTEIGTVH VENSGGQGLS LSLSSSLEAA  240
AKAEEYRNIY YGANSSNASP HHQYNHFKTL LANSSQHQHQ VLNQFRSSPA ASSSSIGAVN  300
ILRNSRYTTA AQELLEEFCS VGREFLKKNK HGNSSNPNTS GGDGGGGSSP PSAGAVKDHP  360
PLSASDRIEH QRRKVKLLTM LEEVDRRYNH YCEQMQMVVN SFDIVMGHGA ALPYTALAQK  420
AMSRHFRCLK DAVAAQLKQS CELLGDKDAA GISSSGLTKG ETPWLRLLEQ SLRQQRAFHQ  480
MGMMEQEAWR PQRGLPERSV NILRAWLFEH FLHPYPSDAD KHLLARQTGL SRNQVSNWFI  540
NARVRLWKPM VEEMYQQESK EREREREEEL EENEEDQETK NSNNDKSTKS NNDESNFTAA  600
RTTSQTPTTT APDAAVATGH RLRSDINAYE SDPSSILLPS SYSNAAASAA VSDDLNSRYG  660
GSAAFSAVAT CQQGVGGFDD ADMDGVNVIR FGTNPTGDVS LTLGLRHAGN MPDKDASFCV  720
REFGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16495553563Homeobox protein Meis2
3k2a_B2e-16495553563Homeobox protein Meis2
4xrm_A2e-16495553563Homeobox protein Meis2
4xrm_B2e-16495553563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMap328081
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1738160.0AF173816.1 Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869016.10.0BEL1-like homeodomain protein 2 isoform X1
RefseqXP_020874343.10.0BEL1-like homeodomain protein 2 isoform X1
SwissprotQ9SW800.0BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLD7MB330.0D7MB33_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_70003080.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.20.0BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]