PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 327841
Common NameARALYDRAFT_327841
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family BBR-BPC
Protein Properties Length: 445aa    MW: 49570.8 Da    PI: 9.1087
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
327841genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind230.81.1e-70222798272
  GAGA_bind   8 e..rnkgyye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllven 89 
                e  r k+ y+                ++++l   +++++ms++aerda+++e n a++++k+a+a+rd+a+ qrdkal+er++a++e +++l al ++en
     327841  22 EngRYKPDYNkgtqsvnmmpqhqikeQHNALV--MNKKIMSILAERDAAVKEINEAVAATKEALAARDEALEQRDKALSERDNAIMETESALNALRYREN 119
                44566664444666666666555543556666..99**************************************************************** PP

  GAGA_bind  90 slasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderska 189
                +l+  l+  +   +g ++                  + e++     pi++ ++ea ++k  k   r+k+ k+  ++k kk +e+ +++v++++  ++s++
     327841 120 NLNYILS--CA-KRGGSHSC---------------VTDESHLPAPSPISTIPPEAAHTKLAK---RKKESKQGARSKGKKVGEDLNRQVASPG--KKSRK 196
                9664441..11.12222221...............123455567789999999998888887...55666666677777888899********..56*** PP

  GAGA_bind 190 ekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
                +++s d++ln v++De+t+PvP+C+CtG+ rqCYkWGnGGWqS+CCttt+S+yPLP+++++r++R++grKmS+++f++lL+ L
     327841 197 DWDSYDVGLNLVTFDETTMPVPMCTCTGTARQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRVGGRKMSGSVFSRLLSLL 279
                ********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.0E-13715282IPR010409GAGA-binding transcriptional activator
PfamPF062171.3E-6745279IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MFDIILAIAV ESKRMECGGQ YENGRYKPDY NKGTQSVNMM PQHQIKEQHN ALVMNKKIMS  60
ILAERDAAVK EINEAVAATK EALAARDEAL EQRDKALSER DNAIMETESA LNALRYRENN  120
LNYILSCAKR GGSHSCVTDE SHLPAPSPIS TIPPEAAHTK LAKRKKESKQ GARSKGKKVG  180
EDLNRQVASP GKKSRKDWDS YDVGLNLVTF DETTMPVPMC TCTGTARQCY KWGNGGWQSS  240
CCTTTLSQYP LPQMPNKRHS RVGGRKMSGS VFSRLLSLLT IRFKSRMKDE ARFVIVFTVD  300
SSVNANILVL VFFATFFSGI AFAFEWTFHG KNHSGFQWII YYALSLIILP ILIWLGLGIV  360
MIVSSSHGSM QVASVAVEEE QCVNSFAEDS GNEETKENNC ESLAIVVDSD KKKCTDKVFE  420
NKTAKLKRTV SFPLHSHVRS CRTR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00480DAPTransfer from AT4G38910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap327841
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6336030.0EF633603.1 Cardamine pratensis GAGA-motif binding transcriptional activator (BBR/BPC5) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020875421.10.0protein BASIC PENTACYSTEINE5 isoform X1
SwissprotF4JUI31e-165BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBLD7MFP80.0D7MFP8_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_70000680.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38910.21e-160basic pentacysteine 5