PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 327725
Common NameARALYDRAFT_327725
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 522aa    MW: 59217.8 Da    PI: 6.6572
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
327725genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29.4e-063453781755
             HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
     HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
             N++f+ Lr+++P+ +       ++K +iL  +++Y+++L+
  327725 345 NEKFSVLRTMVPTvN------EVDKESILNNTIKYLQELE 378
             9************65......8***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-4523214IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.064328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-7334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-4342382No hitNo description
SuperFamilySSF474592.88E-8343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-8345388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048629Biological Processtrichome patterning
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MSLTMADGVE APGGRSKRQN SLLRKQLALA VRSVQWSYAI FWSSSLTQPG VVEWGEGCYN  60
GDMKKRKKSY ESHYKYGLQR SKQLRKLYLS MLEGDNGTTT VSTTHDDHND DDDDNCRHST  120
SMMLSPDDLS DEEWYYLVSM SYVFSPSQCL PGRASATGET IWLCNAQYAE NKLFSRSLLA  180
RTVVCFPYLG GVIELGVTEL ISEDHSLLQH VKSCLLEISA HQDNDDEKKM GIKIIEEKHQ  240
IPLGISDEDL HYKRTISTVL NYAADRSSKN IHHRQPSTVS SDSGSSFLRW KQCEQPDSGF  300
VQKKQSHNVL RKILHDVPLM HTKRMFPSQK SGLNQDDPSD TRKENEKFSV LRTMVPTVNE  360
VDKESILNNT IKYLQELEAR VEELESCMGS VNFVERQRKT PENLNDSVLI EETSGNYDDS  420
TKIDGNSGET EQVTVSRDKT HLRVKLKETE VVIEVRCSYR DYIVADIMET LSNLHMDAFS  480
VRSHTLNKFL TLNLKAKFRG AAVASVGMIK RELRRVVGDL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-11232159192Transcription factor MYC3
4rqw_B5e-11232159192Transcription factor MYC3
4rs9_A5e-11232159192Transcription factor MYC3
4yz6_A5e-11232159192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16367KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap327725
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936640.0AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879439.10.0transcription factor MYC1 isoform X1
SwissprotQ8W2F10.0BH012_ARATH; Transcription factor MYC1
TrEMBLD7M5N50.0D7M5N5_ARALL; F6N23.22 protein
STRINGfgenesh1_pm.C_scaffold_60029450.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.10.0bHLH family protein