PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 327396
Common NameARALYDRAFT_327396, WRKY42
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 530aa    MW: 58152.4 Da    PI: 6.7578
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
327396genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.3e-31293351259
             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
             +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  327396 293 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 351
             7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-34277353IPR003657WRKY domain
SuperFamilySSF1182906.15E-28285353IPR003657WRKY domain
PROSITE profilePS5081130.044287353IPR003657WRKY domain
SMARTSM007742.6E-37292352IPR003657WRKY domain
PfamPF031061.7E-26294351IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MFRFPISLGG GPRDNTKPLD EQHHRAVVDE VDFFRSAEKR DRVSRDDQDM IADHETHRVH  60
VKRENSRVDD HEDRSTDHIN IGLNLLTANT GSDESMVDDG LSVDMEEKRT KCENAQLRAE  120
LKKASEDNQR LKEMLSQTTN SFNSLQMQLV TVMRQQEDHH HLATTENKDN ATNRHEVPEM  180
VPKQFIDLGP QSDEVSSEER TTVRSGSPPS LLEKSSSRQN GKRVLVREES PETESNGWRN  240
PNKVPKHHAS SSDCGGNGSE NASNKVIEQA AAEATMRKAR VSVRARSEAN MLSDGCQWRK  300
YGQKMAKGNP CPRAYYRCTM AVGCPVRKQV QRCAEDRTIL ITTYEGNHNH PLPPAAMNMA  360
STTTAAASML LSGSTMSNQD GLMNPTNLLA RTMLPCSSSM ATISASAPFP TITLDLTDSS  420
NGNNPTNNPL MQFSQRSGFA ELNQSVLPHM MGQALYYNQQ SKFSGLHMPS QPLNAGESIS  480
AATAAIASNP NFAAALAAAI TSIINGSNTQ QNGNNNNSNV TTSNVDNRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22279355176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap327396
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526500.0AY052650.1 Arabidopsis thaliana WRKY transcription factor 42 (WRKY42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872692.10.0WRKY transcription factor 42
SwissprotQ9XEC30.0WRK42_ARATH; WRKY transcription factor 42
TrEMBLD7M1750.0D7M175_ARALL; WRKY DNA-binding protein 42
STRINGfgenesh1_pm.C_scaffold_60026160.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.10.0WRKY family protein