PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 326585 | ||||||||
Common Name | ARALYDRAFT_326585 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 369aa MW: 41649.9 Da PI: 8.4208 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23.2 | 1.7e-07 | 211 | 233 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F+r nL+ H+r H 326585 211 HYCQICGKGFKRDANLRMHMRAH 233 68*******************99 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00073 | 332 | 347 | 6 | 21 |
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 Cg+ Fsrk+ L++H + 326585 332 CGTKFSRKDKLMSHVS 347 **************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.92E-6 | 209 | 236 | No hit | No description |
PROSITE profile | PS50157 | 12.632 | 211 | 238 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.8E-6 | 211 | 235 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0028 | 211 | 233 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 213 | 233 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 262 | 295 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 73 | 300 | 322 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MNRDEHITNK GEGSMSSFSG TTSTSSKQIS LNPVTAAGAK SLEEDDVSLS LLYNLSTLQD 60 KVHQIQSLVS FYMISSNNIN QYSGSTSLAV ANIGSLVQEI ITAASSMLYT CQQLHIGSNN 120 SNDIDNDHTV DAMVLEFSRQ ETDPGHDFVQ ESTNLFGVQE RGHVSFPNQN HDWYDTETLN 180 PKKDKHRSKP KPGNYEILEL DVADLLAKYT HYCQICGKGF KRDANLRMHM RAHGDEYKTR 240 EALISPTSQE KKGEYTLKKH YYSCPHQGCR WNQRHEKFQP LKSVICAKNH YKRSHCPKMY 300 MCRRCSVKHF SVLSDLRTHE KHCGDIKWVC SCGTKFSRKD KLMSHVSLFL GHVPAHGSSQ 360 PPTTITLK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00522 | DAP | Transfer from AT5G22890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 326585 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB005243 | 0.0 | AB005243.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRN17. | |||
GenBank | AK227740 | 0.0 | AK227740.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-31-P16. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002874102.1 | 0.0 | zinc finger protein STOP1 homolog | ||||
Swissprot | Q0WT24 | 0.0 | STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | D7M1K6 | 0.0 | D7M1K6_ARALL; Zinc finger family protein | ||||
STRING | fgenesh1_pm.C_scaffold_6001805 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5752 | 25 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 0.0 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 326585 |
Entrez Gene | 9310169 |