PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 325322 | ||||||||
Common Name | ARALYDRAFT_325322 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NF-YC | ||||||||
Protein Properties | Length: 302aa MW: 33765 Da PI: 5.6759 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 56.5 | 6e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l ++ + + +t+ ++++v+r ++fdfl ++v + 325322 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDHTYEITLQRGAKTVSSLHLKNCVERYNVFDFLREVVSK 86 5789************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.7E-25 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.92E-19 | 4 | 94 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.4E-19 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDHT YEITLQRGAK 60 TVSSLHLKNC VERYNVFDFL REVVSKVPDY GHGHGHGHGQ ANADVTMEDR SISKRRKPTG 120 DEVNDSDEEL KKTKVQEMGH AGPSGRGRGR GRGKGRGRSA KTAERELLNR EMEIEPTILV 180 ASPLLTLDEI KIPAPPQQLT LQDSEKKDVD ERSNHTKQEL QSPKKEGNDT NSGLGRGFDL 240 NTHSLDIELK PPLITASIEL KPAEEYQCWS TPNMANVDLM QLANMSKRLD EDEEDYDEEE 300 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 2e-22 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 156 | RGRGRGKGRG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 325322 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002873294.1 | 0.0 | dr1-associated corepressor homolog | ||||
TrEMBL | D7LZX1 | 0.0 | D7LZX1_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_6000542 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3506 | 24 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 7e-96 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | 325322 |
Entrez Gene | 9309362 |