PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

325146

Common Name

ARALYDRAFT_325146

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 205aa MW: 22622.1 Da PI: 7.1095

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
325146	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	27	49	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C++ F L H++ H 325146 27 YKCKYCPRKFDKTQALGGHQNAH 49 9***************9999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.15E-6	24	55	No hit	No description
PROSITE profile	PS50157	11.468	27	54	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	29	49	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MLSSDSNYAS DISDNASATG SIENPMYKCK YCPRKFDKTQ ALGGHQNAHK KERGVKKQHE 60 AFLAHLNQPK PDLYLYSYLH PHSFPNQYAL SPGFEQRRYK VDRIDNMSMV YNQYMGSSSS 120 GFLGLRSDPS QRMDRGSTFN GISSQTQPQP QPLSSASSPV CLDLCLGVGS SQTQPQPEEP 180 NDATEEMDAK KENDGSSLSL SLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	325146

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002871138.2	1e-150	zinc finger protein 5
TrEMBL	D7LYA9	1e-149	D7LYA9_ARALL; Zinc finger family protein
STRING	fgenesh1_pm.C_scaffold_6000366	1e-150	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15741	13	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05120.1	2e-96	C2H2 family protein

Link Out ? help Back to Top
Phytozome	325146
Entrez Gene	9309264