PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 325029 | ||||||||
Common Name | ARALYDRAFT_325029 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 238aa MW: 27086.4 Da PI: 9.1793 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.3 | 6.2e-19 | 80 | 132 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t+ ql Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k 325029 80 KKRLTSGQLASLERSFQEDIKLDSDRKVKLSQELGLQPRQIAVWFQNRRARWK 132 45699***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 115.1 | 4.2e-37 | 79 | 169 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk+rl++ q+++LE+sF+e+ kL+++rKv+l++eLglqprq+avWFqnrRAR+k+kqlE+ y++L+++yd + +e+++L++ev++Lr+ l+ 325029 79 KKKRLTSGQLASLERSFQEDIKLDSDRKVKLSQELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVFREKQMLHEEVKKLRAILR 169 9**************************************************************************************8775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.57E-18 | 68 | 136 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.779 | 74 | 134 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-17 | 76 | 138 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.21E-15 | 79 | 135 | No hit | No description |
Pfam | PF00046 | 2.2E-16 | 80 | 132 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-19 | 83 | 132 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.8E-5 | 105 | 114 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 109 | 132 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.8E-5 | 114 | 130 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MEWSTNSNVE NVRVAFMPPP WPESSSFNSL HSFNFDPYAA GNSYTPGDTQ TGPVISVPES 60 EKIMNAYRFP NNNNNEMIKK KRLTSGQLAS LERSFQEDIK LDSDRKVKLS QELGLQPRQI 120 AVWFQNRRAR WKAKQLEQLY DSLRQEYDVV FREKQMLHEE VKKLRAILRD QGLIKKQISA 180 GTIKVSGEED TTEVSSVVVA HPRTENLNTN QITGGNQVYG QYNNPMLVAS SGWLSYP* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 126 | 134 | RRARWKAKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 325029 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU352029 | 0.0 | EU352029.1 Arabidopsis lyrata At5g03790-like protein gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002871058.1 | 1e-177 | putative homeobox-leucine zipper protein ATHB-51 isoform X3 | ||||
Swissprot | Q9LZR0 | 1e-165 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | D7LWT7 | 1e-176 | D7LWT7_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_6000249 | 1e-176 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03790.1 | 1e-143 | homeobox 51 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 325029 |
Entrez Gene | 9309182 |
Publications ? help Back to Top | |||
---|---|---|---|
|