PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 323835
Common NameARALYDRAFT_323835
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRF
Protein Properties Length: 543aa    MW: 60623 Da    PI: 7.7414
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
323835genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.43.3e-25150194145
     WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
             d+epgrC+RtDGKkWRCsr+v++g+k+C+rH+hrgr+rsrk++e+
  323835 150 DPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRGRNRSRKPVET 194
             79****************************************986 PP
2QLQ53.19.4e-1982116337
     QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
             F++aQ+q+L+ Q+l+y+y++a++ vP+eLl++i+k
  323835  82 FSWAQWQELELQALIYRYMLAGASVPQELLLPIKK 116
             *********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.6E-1280116IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.41281116IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.7E-1382114IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.479150194IPR014977WRC domain
PfamPF088792.7E-21151193IPR014977WRC domain
SuperFamilySSF530984.7E-28394532IPR012337Ribonuclease H-like domain
HamapMF_0065118.38394533IPR005227Putative pre-16S rRNA nuclease
Gene3DG3DSA:3.30.420.1401.4E-33394535IPR006641YqgF/RNase H-like domain
SMARTSM007321.0E-27394498IPR006641YqgF/RNase H-like domain
PfamPF036529.4E-29395530IPR005227Putative pre-16S rRNA nuclease
TIGRFAMsTIGR002502.5E-16397530IPR005227Putative pre-16S rRNA nuclease
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006364Biological ProcessrRNA processing
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MDLQLKQWRS QQQNESEDQG SAATKISNFF FDQIQSQTAT SAAAAPLPLF VPEPTSSSSF  60
SCFSPDSSNS SSSRFLKMGN FFSWAQWQEL ELQALIYRYM LAGASVPQEL LLPIKKSLIH  120
QSPMHFLHHP LQHSFPLHQP SWYWGRGAMD PEPGRCKRTD GKKWRCSRDV VAGHKYCDRH  180
IHRGRNRSRK PVETATTTTT TTATTTASSF VLGEELGHGP NNTSGSSQHL HLSHQQSCSS  240
EMKQESNNNK RPYEANSGFS NGRSDDGHIL RHFFDDWPRS SDSTSSPMSS STCHLSISMP  300
GNRNASSDVS LKLSTGNEEE EENMRNNNER EQLNWWSNGG NHHNMGGPLA EALRSASSTS  360
SVLHQMGIST QEMKYVKPLS LLGNALKTKV SVPGRFLGLD VGDKYVGLAI SDPSNMVASP  420
LSVLLRKKTN IDLMATDFQN LVKAFSVSGL VVGYPFGKLN NVEDVVTVNL FIEELRKTEK  480
LKDVKYTYWD ERLSSKTVEL MLKPLNLHPV QEKTMLDKLA AVVILQEYLD YANRYLNTEP  540
AE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vhx_A7e-133955334140Putative Holliday junction resolvase
1vhx_B7e-133955334140Putative Holliday junction resolvase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap323835
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1026370.0AY102637.1 Arabidopsis thaliana transcription activator (GRF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881384.10.0growth-regulating factor 4
SwissprotQ8L8A70.0GRF4_ARATH; Growth-regulating factor 4
TrEMBLD7LUC30.0D7LUC3_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_50013790.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19262667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.10.0growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]