PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 323008
Common NameARALYDRAFT_323008
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 326aa    MW: 36963.3 Da    PI: 10.4221
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
323008genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-05628123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             ++C++Cgk F +      H+r H
   323008  6 HVCKKCGKKFATLKGVYGHQRIH 28
             79*******************99 PP
2zf-C2H213.40.00024126148123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ykC +C+ksF  +  L +H+r+H
   323008 126 YKCRICDKSFVCSQALGSHQRLH 148
              9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.55E-10428No hitNo description
Gene3DG3DSA:3.30.160.606.5E-6430IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.78633IPR007087Zinc finger, C2H2
SMARTSM003550.06628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576671.55E-10121148No hitNo description
PfamPF139122.1E-4125150IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-6126148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.041126148IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.113126153IPR007087Zinc finger, C2H2
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
SMARTSM00355210272294IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSQRLHVCKK CGKKFATLKG VYGHQRIHSG NYNRIEDDNG LQKIWGLKKS RVCSVSASDR  60
FKGSSFMTEI KKHEVIEAAM NLVMLSRRVY DFASIRNLPL GVDFMDLELK PSPLRSKLQK  120
KTQSTYKCRI CDKSFVCSQA LGSHQRLHRS MKGHLVRKRE YIEDDKAKNI VTQRSSFELS  180
QKEKILQRVE PKLEFHERLT HSGFDKSSTC SKANFSAFPS PLKAKKIVSQ PSSFEASVDE  240
KFLHRFEQKL DFSKQLAHSG FDNSSSCRKT NYRFKICGKS FVCSQAQGGH QKLHRSEDGN  300
SFSGVTDSEA SKIVSQPSSY KSQGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMap323008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0013091e-153AP001309.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MUO10.
GenBankCP0026861e-153CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_189580.11e-163zinc finger (C2H2 type) family protein
TrEMBLD7LNX60.0D7LNX6_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_50005520.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15545814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.11e-167C2H2 family protein