PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 322202 | ||||||||
Common Name | ARALYDRAFT_322202 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 435aa MW: 49224.4 Da PI: 9.0177 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 70.9 | 1.5e-22 | 89 | 133 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++ep rCrRtDGKkWRC++rvl +k+CErH+hrgr+rsrk +e+ 322202 89 EPEPTRCRRTDGKKWRCRNRVLLYEKYCERHMHRGRKRSRKLVES 133 69***************************************9986 PP | |||||||
2 | WRC | 67.4 | 1.8e-21 | 311 | 349 | 1 | 39 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrs 39 d+epgrCrRtDGKkWRCs+++l+g+k+C++H+hrg +++ 322202 311 DNEPGRCRRTDGKKWRCSKDALSGQKYCDKHMHRGIKKK 349 68*********************************8876 PP | |||||||
3 | QLQ | 42.1 | 2.7e-15 | 24 | 59 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++ aaQl+++++Q l+y+y+ a++ vP++L+++i++ 322202 24 WMKAAQLMEFRMQTLVYRYIEAGLRVPHHLVVPIWN 59 789********************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.8E-7 | 23 | 59 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 16.022 | 24 | 59 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.4E-8 | 26 | 58 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.668 | 89 | 133 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.1E-18 | 90 | 132 | IPR014977 | WRC domain |
PROSITE profile | PS51667 | 21.849 | 311 | 355 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.2E-18 | 313 | 350 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 435 aa Download sequence Send to blast |
MKMQSPKMEQ EEVEVERMGK KWPWMKAAQL MEFRMQTLVY RYIEAGLRVP HHLVVPIWNS 60 LALSSSSNYN YHSSSLLSNK GVNHIDTVEP EPTRCRRTDG KKWRCRNRVL LYEKYCERHM 120 HRGRKRSRKL VESSYEVASS STKHDNTCGL DRNNDSQSVL RGTISGSSNA QVVTIASLPS 180 ARACDDVIRP SLVISESTNK SVSYCDRSRR NMEISCDDFI STKESSLCVR VVPLQGDENL 240 PSVQKFFPEV SDNSLEAAKF SSNRKNDIIA RSREWKNMNV VNGGLFSSIH FSPDTVLQER 300 GVFRLQRVDT DNEPGRCRRT DGKKWRCSKD ALSGQKYCDK HMHRGIKKKH PVDTTNLHER 360 SGFSPLTVKS AARSVSCKDG DDQKLSVSVM GIPLPRVSDE KSSCSYSTDT TITDTALRGE 420 EDDEEYLSLF SSGV* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 122 | 129 | GRKRSRKL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:21036927}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 322202 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY074647 | 0.0 | AY074647.1 Arabidopsis thaliana At2g45480/F4L23.1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002880181.1 | 0.0 | growth-regulating factor 9 isoform X1 | ||||
Swissprot | Q8S9M3 | 0.0 | GRF9_ARATH; Growth-regulating factor 9 | ||||
TrEMBL | D7LCJ7 | 0.0 | D7LCJ7_ARALL; At2g45480/F4L23.1 | ||||
STRING | fgenesh1_pm.C_scaffold_4002259 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13760 | 20 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45480.1 | 0.0 | growth-regulating factor 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 322202 |
Entrez Gene | 9318082 |
Publications ? help Back to Top | |||
---|---|---|---|
|