PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 321718 | ||||||||
Common Name | ARALYDRAFT_321718 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 412aa MW: 46240.8 Da PI: 7.167 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.7 | 9.7e-32 | 84 | 137 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +F++ave+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+ 321718 84 PRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRS 137 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-30 | 80 | 138 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.117 | 80 | 140 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.02E-16 | 81 | 139 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-24 | 84 | 139 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-9 | 85 | 136 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MRSSSQNSEN SKTCLSNNFK ATTKNEEDKD EEDDEEGEED EEDRSGDQSP SSNSYVEESG 60 SHHHHDQNKK NGGSVRPYNR SKTPRLRWTP ELHICFLQAV ERLGGPDRAT PKLVLQLMNV 120 KGLSIAHVKS HLQMYRSKKT DDPNQGDQGF SFEHGAGYTY NLSQLPMLQS FDQRPSSSLG 180 YGGGSWTDHR RQIYRSPWRG LTTRDSTRTR QTLFSSQPGE RFHGVSNSIL DDKNKTISFR 240 INSHEGVHEN NGVAGAVPRI HRSFLEGMKT FNKSWGQSLS SNPKSSTPTI PQDHIATTLN 300 SYQWENARVA EGSENILKRK RLLLSDDCNK SDQDLDLSLS LKVPRTHDNL GVCLLEDEEK 360 EHDDHQDSKG LSLSLSSSGL SKLGRAIRKE DQSDHKKRKI SVLASPLDLT L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-17 | 85 | 139 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 85 | 139 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 85 | 139 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 85 | 139 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00301 | DAP | Transfer from AT2G40260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 321718 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007020 | 0.0 | AC007020.5 Arabidopsis thaliana chromosome 2 clone T3G21 map g4514, complete sequence. | |||
GenBank | AF085279 | 0.0 | AF085279.1 Arabidopsis thaliana ABA-regulated gene cluster, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002881704.1 | 0.0 | uncharacterized protein LOC9315925 | ||||
TrEMBL | D7LEH7 | 0.0 | D7LEH7_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_4001775 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9359 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 0.0 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | 321718 |
Entrez Gene | 9315925 |