PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 321616
Common NameARALYDRAFT_321616
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 321aa    MW: 36211.2 Da    PI: 9.5555
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
321616genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-17103152155
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
             s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ +++g
  321616 103 SHYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYTAARAYDRAAIRFRG 152
             79*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.04E-15103160IPR016177DNA-binding domain
PfamPF008471.4E-9103152IPR001471AP2/ERF domain
CDDcd000181.62E-23104159No hitNo description
SMARTSM003807.6E-29104166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-16104159IPR001471AP2/ERF domain
PROSITE profilePS5103216.766104160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MLDLNLGILS THNEDEDCKV PTSIVHQEED SINPSNDNLS LITFGILKRK EEVEILPPPP  60
PPPESVLSGA GNEWLNLSSM QRNKQEMLVM KKKSRRGPRS RSSHYRGVTF YRRTGRWESH  120
IWDCGKQVYL GGFDTAYTAA RAYDRAAIRF RGLQADINFI VDDYKQDIEK MKNLSKEEFV  180
QSLRRASASL ARGGSRYKNT HMRNDHIHLF QNRGWNAAAA KCNEIRKMEG DIKLGPHNKG  240
NEHNDLELSL GISSSSKKRI LEPADYYMGL NRSVMSLHGK PLPVYLPITE MKPLKTVVAS  300
SGFPFIAMNN SSSLTTCFDP *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap321616
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269|PubMed:14573523}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5762760.0AY576276.1 Arabidopsis thaliana AP2 domain transcription factor (SNZ) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881639.10.0AP2-like ethylene-responsive transcription factor SNZ
SwissprotQ6PV670.0SNZ_ARATH; AP2-like ethylene-responsive transcription factor SNZ
TrEMBLD7LCG40.0D7LCG4_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_40016730.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108581832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.10.0AP2 family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li W,Wang T,Zhang Y,Li Y
    Overexpression of soybean miR172c confers tolerance to water deficit and salt stress, but increases ABA sensitivity in transgenic Arabidopsis thaliana.
    J. Exp. Bot., 2016. 67(1): p. 175-94
    [PMID:26466661]
  4. Gras DE, et al.
    SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana.
    J. Exp. Bot., 2018. 69(3): p. 619-631
    [PMID:29309650]