PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 319343
Common NameARALYDRAFT_319343
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 313aa    MW: 35013.2 Da    PI: 6.5878
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
319343genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.42.1e-3094148155
  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
              k+rlrW+ +LH++Fv ave+LGG++kAtPk+++e+m+v+g++l+hvkSHLQk+Rl
   319343  94 KARLRWSRDLHDCFVTAVEKLGGPDKATPKSVKETMEVEGIALHHVKSHLQKFRL 148
              68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-2791148IPR009057Homeodomain-like
SuperFamilySSF466891.36E-1393148IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-2594149IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MKKKEKGKEI VTFEENPSTS IHHLDHFDHT KKVSMLLSEQ EIEVILQKST SNKETYKENL  60
QKSKKDNAQK VGIEEGNGSS SKITPCIFYT SDEKARLRWS RDLHDCFVTA VEKLGGPDKA  120
TPKSVKETME VEGIALHHVK SHLQKFRLGK CNIRDGTNQY IRRFINPYVT IESQSMPGLS  180
TIPTQQQLQL NESCVIHDSY RNATFSSAPV PPTIDPLDQD TLPASVSHHT YISSYPSYNT  240
LEVVRAQLNA LQNSSTNQTQ ETSSRETNLS SSVTRDEVDP VDKYIDWAKV EESGIGLDPV  300
EVFKALGFGV SP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-1794150258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-1794150258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-1794150258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-1794150258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-1794150258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-1794150258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-1794150258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-1794150258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap319343
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064137e-84AC006413.4 Arabidopsis thaliana chromosome 2 clone F5K7 map ve013, complete sequence.
GenBankCP0026857e-84CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886266.10.0transcription repressor KAN1
TrEMBLD7L9C80.0D7L9C8_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_30023590.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134061520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06020.11e-152G2-like family protein