PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 318837 | ||||||||
Common Name | ARALYDRAFT_318837 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 354aa MW: 40318.7 Da PI: 6.8869 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.2e-05 | 197 | 216 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ 318837 197 FSCPLCFKTFNRYNNMQMHM 216 89*****************9 PP | |||||||
2 | zf-C2H2 | 13 | 0.00031 | 281 | 303 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ 318837 281 FACRRCGKAFAVKGDWRTHEKNC 303 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.66 | 197 | 224 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.0E-5 | 197 | 216 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 199 | 219 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.85E-6 | 267 | 301 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 268 | 301 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.767 | 281 | 301 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MADPACIFKN GYVDYYDYSF NYATSLSRIY NSHDSFYYPH HTTNPNINTN PNFTSPDSPP 60 LREALPLLSL SPIHKHQEPI AHHHEYYFME TTETSSNSNF IDHDLGQSQE THRHLDVAVD 120 LHLGLPNLGD GGSSSSDVVL ESTDFQEHHH DHHQDQGVEV TIASDHDDDH GGLQRGNHLH 180 HFWIPTPSQI LMGPTQFSCP LCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTAMLK 240 LPCYCCAPGC KNNIDHPRAR PLKDFRTLQT HYKRKHGVRP FACRRCGKAF AVKGDWRTHE 300 KNCGKLWYCS CGSDFKHKRS LKDHVKAFGN GHVPCCGIDH EEEEAASDVE QQE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 318837 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ311811 | 0.0 | AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002885409.1 | 0.0 | zinc finger protein WIP4 | ||||
Swissprot | Q8W030 | 0.0 | ZWIP4_ARATH; Zinc finger protein WIP4 | ||||
TrEMBL | D7KZX7 | 0.0 | D7KZX7_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_3001853 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20880.1 | 0.0 | WIP domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | 318837 |
Entrez Gene | 9321475 |
Publications ? help Back to Top | |||
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