PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 318465
Common NameARALYDRAFT_318465
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 303aa    MW: 35675.2 Da    PI: 10.473
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
318465genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.31.2e-1721114198
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
             ffk++ +sd +++++  ++ +f+++ +  k  s +++++ ++g++W +++  +k+++ y+++ +GW +Fv++n L e++f++F++ g++ f  +v +++
  318465  21 FFKIFQSSDLSSECMRAFSYSFISRLS-RKDFSYKMVIRAQWGKTWHLEI--SKNPRYYYIErRGWDQFVSDNALGENEFITFTHRGNMVF--HVNIYE 114
             99*********************9985.456999****************..9***99665549********************9999999..888876 PP
2B332.81.2e-102102861394
             TT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
      B3  13 sgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
             ++ l +pk+f+++h   +++sk  t+++++g  sW+v +    +  r+++++G ++ +++  L +gD ++Fkl++   fe+v+
  318465 210 LKFLAIPKHFVDDHI--PNKSKFFTVRHPNGiGSWKVLC--LVREIRTIFSGGYSKLAREYPLMVGDKCTFKLIK--PFEFVL 286
             35699******9995..446778999*****9*******..8888899************************987..555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.1E-1916121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-1718117IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-1720113No hitNo description
PROSITE profilePS5086312.67521116IPR003340B3 DNA binding domain
PfamPF023626.0E-1621114IPR003340B3 DNA binding domain
SMARTSM010191.1E-2021116IPR003340B3 DNA binding domain
SuperFamilySSF1019361.06E-16198289IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.825198292IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-14199287IPR015300DNA-binding pseudobarrel domain
CDDcd100171.98E-11199280No hitNo description
SMARTSM010192.4E-15201292IPR003340B3 DNA binding domain
PfamPF023621.7E-8209285IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRRRNIGFD KIIEERKMLS FFKIFQSSDL SSECMRAFSY SFISRLSRKD FSYKMVIRAQ  60
WGKTWHLEIS KNPRYYYIER RGWDQFVSDN ALGENEFITF THRGNMVFHV NIYEQNGVEM  120
LTPRKFQTMD SSSGIKKEGE SSFKDVKKEE ETDESAGRAE FVVRKRKTEE SKSSKKKMER  180
KKKKSKSKSK SKEVLNGVPE FKITIRKSYL KFLAIPKHFV DDHIPNKSKF FTVRHPNGIG  240
SWKVLCLVRE IRTIFSGGYS KLAREYPLMV GDKCTFKLIK PFEFVLLTSK KTRDEIDHYM  300
ID*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164183KRKTEESKSSKKKMERKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap318465
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936180.0AB493618.1 Arabidopsis thaliana At3g17010 mRNA for hypothetical protein, partial cds, clone: RAAt3g17010.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889192.10.0B3 domain-containing protein At3g17010 isoform X1
SwissprotQ9LSP61e-178Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLD7L6A00.0D7L6A0_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh1_pm.C_scaffold_30014810.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.11e-158B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]