PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 317904
Common NameARALYDRAFT_317904
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 356aa    MW: 40297.7 Da    PI: 7.9197
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
317904genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.85.5e-1522961189
            HHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
      B3 11 lksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
            + s+ l +p  f++++  g k+e++  ++l++  s   W+vk+  ++++    lt+GW++F+ +++L++gD+vvF++dg+  
  317904 22 FHSH-LNIPMAFFSRYidGTKNEGNAVVKLRSnASDINWQVKM--DGRR----LTQGWQKFATSHDLQVGDIVVFRHDGDLL 96
            4555.99**********977788899999*996777*******..9998....***********************887533 PP
2B360.33.3e-19150245399
             EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
              + +++++l++++l lp +f +++g+kk++  ++tl +e+g+ W++ l+y + + +r+++++GW++F+ ang +++ +++Fkl++   +++v++++++
  317904 150 ITRVTESNLSKDMLFLPSDFSRSNGLKKRQC-DITLLNEDGEPWTLFLTYhKSRFNRVYIRSGWRSFCLANGKRANSVLTFKLVQ-AATTPVLQLCSS 245
             5678999*******************98775.****************995555567**************************98.788899999986 PP
3B347.72.9e-15254342190
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
             f++ ++++++lk++ l+lp +f++++g+++ee  ++tl d+ g + +  l+ +   gr+ l+k W+eF++ ng++ g+++ +kl+++ +++
  317904 254 FLTLTLTPYNLKNDKLCLPMTFVKANGIENEE--KITLVDRYGIKRTTSLKLEDEYGRMRLGKEWREFCDVNGVNIGESFKLKLIKEkEDT 342
             6778899*******************988655..8********666666666999999*************************99774333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-207107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-199112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.68811105IPR003340B3 DNA binding domain
CDDcd100172.16E-1512100No hitNo description
SMARTSM010198.0E-2014105IPR003340B3 DNA binding domain
PfamPF023622.4E-102494IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-19143245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-20144246IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.408148246IPR003340B3 DNA binding domain
CDDcd100172.21E-20148244No hitNo description
SMARTSM010198.4E-26148246IPR003340B3 DNA binding domain
PfamPF023627.8E-18149245IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-17248350IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-17248351IPR015300DNA-binding pseudobarrel domain
CDDcd100172.72E-12253339No hitNo description
PROSITE profilePS5086311.265254352IPR003340B3 DNA binding domain
PfamPF023622.4E-14254348IPR003340B3 DNA binding domain
SMARTSM010192.5E-21254353IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MENVPASSPT KPHFFQPLLP GFHSHLNIPM AFFSRYIDGT KNEGNAVVKL RSNASDINWQ  60
VKMDGRRLTQ GWQKFATSHD LQVGDIVVFR HDGDLLFHVT CLGPSCCEIQ YDNDDDVIQI  120
SSAETDSDSD SKKNENTTEG GTSSDHSCFI TRVTESNLSK DMLFLPSDFS RSNGLKKRQC  180
DITLLNEDGE PWTLFLTYHK SRFNRVYIRS GWRSFCLANG KRANSVLTFK LVQAATTPVL  240
QLCSSSLSTS QNRFLTLTLT PYNLKNDKLC LPMTFVKANG IENEEKITLV DRYGIKRTTS  300
LKLEDEYGRM RLGKEWREFC DVNGVNIGES FKLKLIKEKE DTATHLLKFC SKVFP*
Cis-element ? help Back to Top
SourceLink
PlantRegMap317904
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488930.10.0PREDICTED: B3 domain-containing protein REM10-like
TrEMBLD7L9U10.0D7L9U1_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_30009200.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.17e-91B3 family protein