PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 317484 | ||||||||
Common Name | ARALYDRAFT_317484 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 176aa MW: 19524.4 Da PI: 3.9635 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55 | 1.5e-17 | 16 | 98 | 8 | 96 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 s+v+++++ +p+ + eh ++ +kt +l+ + gr W+v + k++++++++GW +Fv +n+Lk+g+f++F +dg+++ v++ 317484 16 SNVSSNSLKLIPRVYY-EH-LPRWLPKTAILTGTGGRFWKVAM--MSKREQVYFEQGWGNFVADNDLKDGEFLTFVFDGHKSY--EVSI 98 7888999999999999.55.3567999****************..999999*************************9987655..5555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.45E-19 | 8 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.52E-16 | 8 | 99 | No hit | No description |
PROSITE profile | PS50863 | 13.704 | 9 | 102 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-14 | 10 | 102 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.7E-17 | 13 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.8E-14 | 15 | 98 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MASGDVLPRF YTVFLSNVSS NSLKLIPRVY YEHLPRWLPK TAILTGTGGR FWKVAMMSKR 60 EQVYFEQGWG NFVADNDLKD GEFLTFVFDG HKSYEVSIYG RGECKETRAV IQVEEISDET 120 ESDNDSLGSL VDVTPMPVEE NSDDTEGDND SGDSVVDVTP MPVEEISDAS ENDSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 3e-17 | 9 | 104 | 10 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 317484 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493604 | 0.0 | AB493604.1 Arabidopsis thaliana At3g06220 mRNA for hypothetical protein, partial cds, clone: RAAt3g06220. | |||
GenBank | DQ446640 | 0.0 | DQ446640.1 Arabidopsis thaliana clone pENTR221-At3g06220 transcriptional factor B3 family protein (At3g06220) mRNA, complete cds. | |||
GenBank | DQ653069 | 0.0 | DQ653069.1 Arabidopsis thaliana clone 0000017013_0000011937 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020888346.1 | 1e-124 | B3 domain-containing protein At3g06220 | ||||
Swissprot | Q1PES7 | 1e-109 | Y3622_ARATH; B3 domain-containing protein At3g06220 | ||||
TrEMBL | D7L4T4 | 1e-125 | D7L4T4_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_3000500 | 1e-126 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06220.1 | 1e-102 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 317484 |
Entrez Gene | 9318523 |
Publications ? help Back to Top | |||
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