PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 316221
Common NameARALYDRAFT_316221
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 429aa    MW: 48393.2 Da    PI: 6.9933
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
316221genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71e-11238294155
     AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
             s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +++Aa+a++ a++k++g
  316221 238 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDDEKKAARAYDLAALKYWG 294
             78*******************87776664447766.557777**************98 PP
2AP247.64.1e-15337388155
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             s y+GV+++++ grW A+I  +     +k  +lg++ t eeAa+a++ a+ k++g
  316221 337 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDIAAIKFRG 388
             57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.82E-15238304IPR016177DNA-binding domain
CDDcd000183.64E-18238304No hitNo description
PfamPF008475.3E-8238294IPR001471AP2/ERF domain
SMARTSM003804.8E-22239308IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-12239303IPR001471AP2/ERF domain
PROSITE profilePS5103217.069239302IPR001471AP2/ERF domain
PRINTSPR003672.9E-6240251IPR001471AP2/ERF domain
CDDcd000185.01E-25337398No hitNo description
SuperFamilySSF541718.5E-18337397IPR016177DNA-binding domain
PfamPF008472.8E-10337388IPR001471AP2/ERF domain
PROSITE profilePS5103219.019338396IPR001471AP2/ERF domain
SMARTSM003805.1E-33338402IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-18338396IPR001471AP2/ERF domain
PRINTSPR003672.9E-6378398IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MNKWLGFSLT PPLRICDSEE EHEEELRHDG SDGSDPLTHH PRVWGYDINL DHHHHHQHDE  60
VPKVEDLLSN SHQTEYPLTN NQTNVNSTTV VNRLNPPGYL LHEQTVVTPQ YPNLDPNLTH  120
DYGGFERVGS VSVFKSWLGQ GTPTFQLSST YVTEEGGTSN NISHFSNEEI GYNTNGSMLS  180
LALSHGACSD LINETNASVV PVEEPVKIDE KRKRLTGKSQ VKDLVPRKSV DSFGQRTSQY  240
RGVTRHRWTG RYEAHLWDNS CKKEGQTRKG RQGGYDDEKK AARAYDLAAL KYWGPTTHLN  300
FPLSNYEKEI EELNNMNRQE FVAMLRRNSS GFSRGASIYR GVTRHHQHGR WQARIGRVAG  360
NKDLYLGTYS TQEEAAEAYD IAAIKFRGLN AVTNFDINRY DVKRICSSST IFNSDQANRS  420
PTSSGSGQ*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap316221
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464220.0DQ446422.1 Arabidopsis thaliana clone pENTR221-At1g72570 ovule development protein (At1g72570) mRNA, complete cds.
GenBankDQ6529300.0DQ652930.1 Arabidopsis thaliana clone 0000013270_0000009577 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891434.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE10.0AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLD7KR170.0D7KR17_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_20012540.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.10.0AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]