PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

313705

Common Name

ARALYDRAFT_313705

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 265aa MW: 30641.6 Da PI: 7.3463

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
313705	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.8	4.1e-08	140	184	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r+RR+ri ++ +eL +l+P + +K + ae+ A +Y+k Lq 313705 140 SIAARKRRRRITEKTQELAKLIPGS-----QKHNTAEMFHAAAKYVKFLQ 184 6788*****************98.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-10	132	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.3E-10	133	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.57	134	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-5	140	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-8	140	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MIIPENDTFF FQAQPQHQPL YHDEALSPSL FRFDHFDHFY DSFLPPQEIF LPIPKTQVFN 60 ESQDLDSFFH TPKHQNLINS SFHFNTHDPF SPRPNSNLCD SYITEAANIS EFRVPDFSST 120 FKVGWTEQGD TKKRELSAQS IAARKRRRRI TEKTQELAKL IPGSQKHNTA EMFHAAAKYV 180 KFLQAQTEIL QLKQSKIQTR DSSKVGREIQ FLLASQEIQE KLSTEEVCVV PREMVQVLKA 240 EECILRNPKL SRDINKLLST NLTN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	148	KKRELSAQSIAARKRRRR
2	143	147	RKRRR
3	144	149	KRRRRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	313705

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488587	0.0	AF488587.1 Arabidopsis thaliana clone bHLH052 putative bHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002893639.2	0.0	transcription factor bHLH52
Swissprot	Q9SA82	1e-163	BH052_ARATH; Transcription factor bHLH52
TrEMBL	D7KFM8	0.0	D7KFM8_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh1_pm.C_scaffold_1002485	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30670.1	1e-165	bHLH family protein

Link Out ? help Back to Top
Phytozome	313705
Entrez Gene	9326949

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]