PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

311843

Common Name

ARALYDRAFT_311843

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 191aa MW: 21377.2 Da PI: 4.9952

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
311843	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.1	3e-43	33	131	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca+ Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeAear+rdPvyG++g i +lq+q+++l+a+la+ + 311843 33 PCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKSQV 131 7*********************************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.389	32	133	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.2E-43	33	129	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MESKSDASAA TTPIISSSSS PPPPFSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA 60 KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR IRDPVYGCAG AIYHLQRQVS 120 ELQAQLAKSQ VEIVNMQFQR SNLLELLYKM DQQNQEQDNI LSFESNDLGF LEDNSNTNSS 180 MLWWDPLWTC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-42	32	134	10	112	LOB family transfactor Ramosa2.1
5ly0_B	4e-42	32	134	10	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	311843

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473841	0.0	AB473841.1 Arabidopsis thaliana ASL8 mRNA for ASYMMETRIC LEAVES2-like 8 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020867785.1	1e-140	LOB domain-containing protein 1
Refseq	XP_020867786.1	1e-140	LOB domain-containing protein 1
Refseq	XP_020867787.1	1e-140	LOB domain-containing protein 1
Swissprot	Q9LQR0	1e-119	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	D7KHW8	1e-139	D7KHW8_ARALL; LOB domain protein 1
STRING	fgenesh1_pm.C_scaffold_1000623	1e-140	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-121	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	311843
Entrez Gene	9325735