PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.ZQ6XG | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 366aa MW: 41581.6 Da PI: 8.4865 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.9 | 7.3e-20 | 16 | 59 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en rq t++kR+ngi+KKA ELS+LCd+++ +++fs+tgk Araip.ZQ6XG 16 KLENMNGRQATYAKRKNGIIKKATELSILCDIDIILLMFSPTGK 59 6799999***********************************97 PP | |||||||
2 | K-box | 15.5 | 7.3e-07 | 117 | 193 | 11 | 88 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 +++ e l+++++ L+ +i++ q +R ++++ e+++ +++L+q+e+ L +s+++iR++K+++ +q+ lq ++ lq Araip.ZQ6XG 117 SQTIEDLSNQARLLQTQISETQ--KRLSQWKEFEKINnVEQLEQMENSLRDSINQIRNRKEHIKNQQLVSLQCNNQHLQ 193 4445555555555555555544..46778999999963889**************************999998888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.422 | 7 | 59 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-26 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.33E-24 | 8 | 101 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 4.26E-23 | 8 | 60 | No hit | No description |
PRINTS | PR00404 | 3.5E-16 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-17 | 17 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-16 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-16 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 6.859 | 113 | 204 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
DVKWCRMGRV KLKIKKLENM NGRQATYAKR KNGIIKKATE LSILCDIDII LLMFSPTGKP 60 SLCRGRRSNF EEVIAKFSQL TPQERAKRKL ESLEALKKTF KKLDHDVNIQ EFLGTSSQTI 120 EDLSNQARLL QTQISETQKR LSQWKEFEKI NNVEQLEQME NSLRDSINQI RNRKEHIKNQ 180 QLVSLQCNNQ HLQPLPWIGN GDSPNLVLPD DSSLLLHKDV EGSASSSFGS YASYIGSSSK 240 TDISNSGQEN GVLSDLSSTT APLRLPLNNG HQFPYMPSYN FNLLNDFKFQ AAPEMNHHHN 300 QPQENHNLSF HHHVNNGNFE APRNAYDSNH HHHHGWASTS GPCAVTMFDE HLYAQASLPQ 360 VNFGST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.ZQ6XG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015956913.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X1 | ||||
Refseq | XP_015956915.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X1 | ||||
Refseq | XP_016190919.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X1 | ||||
Refseq | XP_016190920.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X1 | ||||
Refseq | XP_020975401.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X1 | ||||
Refseq | XP_020994910.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X1 | ||||
Refseq | XP_025639091.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X1 | ||||
Refseq | XP_025639092.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X1 | ||||
Refseq | XP_025690783.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X1 | ||||
Refseq | XP_025690784.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X1 | ||||
Refseq | XP_025690785.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X1 | ||||
Refseq | XP_029147616.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X1 | ||||
Swissprot | Q1PFA4 | 1e-102 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A444ZUG4 | 0.0 | A0A444ZUG4_ARAHY; Uncharacterized protein | ||||
STRING | XP_007158646.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2750 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 1e-79 | AGAMOUS-like 30 |
Publications ? help Back to Top | |||
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