PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.ZJ03A
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family G2-like
Protein Properties Length: 273aa    MW: 29880.2 Da    PI: 6.7141
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.ZJ03AgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.11.7e-27111161152
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                  +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQk
  Araip.ZJ03A 111 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQK 161
                  59*******************.*****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.54E-16108161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-26110161IPR009057Homeodomain-like
TIGRFAMsTIGR015578.2E-22112161IPR006447Myb domain, plants
PfamPF002492.0E-6114161IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MREEDSNWFA RWEDELPPPE ELMPLSQTLI TPDLAIAFDI PSPHTPTAAA TATPTTPNHH  60
LHHHQQPQQP QPPSNPSPSH QQQPSSGGDF ADSGDLGSGA AGEEPARTLK RPRLVWTPQL  120
HKRFVDAVAH LGIKNAVPKT IMQLMSVDGL TRENVASHLQ KPNSEHFLPF VSVPAMHHQQ  180
HHHQMAAAAA GAAAMQHVQL QQQFHRQASG HFGSPPNGHF EHAFMSRQQP PPQNQQQQFN  240
RMGGGVAGYA EDMESANASG ARKVLTLFPT GDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A7e-27111161151Transcription factor LUX
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.ZJ03A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016181526.11e-122transcription factor MYBC1
RefseqXP_025681635.11e-122transcription factor MYBC1
TrEMBLA0A445B2I91e-120A0A445B2I9_ARAHY; Uncharacterized protein
STRINGXP_007162050.12e-95(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85423045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.13e-40G2-like family protein