PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.ZC6G8
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRF
Protein Properties Length: 465aa    MW: 52993.5 Da    PI: 7.3948
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.ZC6G8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.31.6e-2484128145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e+
  Araip.ZC6G8  84 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEQ 128
                  79****************************************997 PP
2QLQ57.73.6e-201247237
          QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                 +FT++Q+q+L++Q+l+yKy+a++  +Pp+Ll+ i++
  Araip.ZC6G8 12 PFTPSQWQELEHQALIYKYMASGISIPPDLLFSIKR 47
                 8*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.6E-121147IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.6971247IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-141245IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.91884128IPR014977WRC domain
PfamPF088791.8E-2085127IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MNGGSSRSSR FPFTPSQWQE LEHQALIYKY MASGISIPPD LLFSIKRGYH LDHSRLFPHH  60
HPPQHREYLL FSFLIYMGLG RKIDPEPGRC RRTDGKKWRC SKEAYPDSKY CERHMHRGKN  120
RSRKPVEQQQ PLKQSPAAAP TNTDDAAASS HHAPSSSTTT TILSITNNNN NSLSPLSSAS  180
LSSHHDLYHQ HQHQHSFLYH HQPSSRSSNS IGFSFQDNNN AAPLFLDTQT NTDCRERYIY  240
GLKEEVDEHA FFTEPSGTMR SFSASSMDDS WQLTPLTISS STSSKQRSCS GLSNENNNEY  300
SYLQLHHHNN NNNSKQREAE QDHGCYMALG KEEEPHHQKT TVHRFFDEWP HKSRGGSSWL  360
DLDDKSSTTQ LSISIPTSSH DFTTFTSRNT RVGPTPWHVG ESKTESKGQQ CTLAKDEWGL  420
HMDMDMVVKR VSIPIPISSA PPFFHLCFVN EVQVDLCLHD RDPMS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.ZC6G8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098462e-42AP009846.1 Lotus japonicus genomic DNA, clone: LjT02E24, TM1624a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020998875.10.0growth-regulating factor 1 isoform X1
RefseqXP_020998879.10.0growth-regulating factor 1 isoform X1
TrEMBLA0A444WMY10.0A0A444WMY1_ARAHY; Uncharacterized protein
STRINGGLYMA13G16924.11e-157(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-43growth-regulating factor 5