PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.Z9RGJ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 443aa    MW: 50886.1 Da    PI: 7.5344
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.Z9RGJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.16.7e-0974119147
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 
                  +fYn+Y+   GF +rk+   +  ++g+i++r++vC+keg+r+ +  +
  Araip.Z9RGJ  74 QFYNTYSCWHGFVMRKDDVVRD-NQGRIISRQLVCNKEGSRNMRYLD 119
                  6****************99998.8888**************998777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.3E-774125IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.47228264IPR007527Zinc finger, SWIM-type
SMARTSM005758.1E-6239266IPR006564Zinc finger, PMZ-type
Gene3DG3DSA:4.10.60.103.8E-4323360IPR001878Zinc finger, CCHC-type
SuperFamilySSF577561.03E-6332364IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.614346361IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MSINEDDVKN DFDNDLGDDF DYQSNAEDDA EDDDVDSLDS TSKSEEVCGV KRIVDLMVED  60
IWNLEFRTED EACQFYNTYS CWHGFVMRKD DVVRDNQGRI ISRQLVCNKE GSRNMRYLDL  120
DDRSREARFY VNRKNTLIDF MHNLDKALKE YRNNKLIANF KSQCSEPVII ISLEVYERSA  180
SCYFTRNIFK EIRNEIQRAG ALNIKVLSTT LDKVKFSVTA LGDPAKDRWV EVDRGKNLFS  240
CSCKLFESCG IPCSHVFCAM KFENILEFPD SLIYKRWTKN CDIACKDLAD FDEVQSELVN  300
LVIPLQSRKQ GNSTPNVNVE GNNDPFVVKS KGAPSKRSSW RKKRACSNCH KYGHYYKRCP  360
DLMPHSVEGN PRDQSDGNAS AKESGFSPKR FANSLRSFSV KSEHHLGPKT KAFKKGGTRK  420
FTVTGIRNRK GKDNTFDEVK ESQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.Z9RGJ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371770.0HQ637177.1 Arachis hypogaea clone AHF-303L13 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016192708.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025674706.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445CDX70.0A0A445CDX7_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF845424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-14FAR1-related sequence 5