PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.Z9NFP
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 145aa    MW: 16481.9 Da    PI: 8.9112
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.Z9NFPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-056890123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y C +Cgk+F  k + ++H +++
  Araip.Z9NFP 68 YACRKCGKPFAVKGDWRTHEKNC 90
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.9E-75188No hitNo description
Gene3DG3DSA:3.30.160.601.0E-55488IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.5596888IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MHMWGHGSQY RKGPDSLKGT QPTAMLRLPC FCCAPGCKHN IDHPRARPLK DFRTLQTHYK  60
RKHGVKPYAC RKCGKPFAVK GDWRTHEKNC GKIWYCLCGS DFKHKRSLKD HVKAFGHGHG  120
AFGIDCMQEE DEAASEVEHD GDCSL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.Z9NFP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169418.11e-108zinc finger protein WIP2
RefseqXP_025669265.11e-108zinc finger protein WIP2
SwissprotQ9SVY11e-87ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A444Y1J11e-107A0A444Y1J1_ARAHY; Uncharacterized protein
STRINGGLYMA12G36660.22e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.15e-90C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]