PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.Z7CL1
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRF
Protein Properties Length: 456aa    MW: 51430.2 Da    PI: 7.2804
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.Z7CL1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.81.1e-24106151146
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 
                  d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e+s
  Araip.Z7CL1 106 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEQS 151
                  79****************************************9975 PP
2QLQ57.73.6e-204277237
          QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                 +FT++Q+q+L++Q+l+yKy+a++  +Pp+Ll+ i++
  Araip.Z7CL1 42 PFTPSQWQELEHQALIYKYMASGISIPPDLLFSIKR 77
                 8*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.6E-124177IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.6974277IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-144275IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.918106150IPR014977WRC domain
PfamPF088791.7E-20107149IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MQVARVSEAS GAFFCLILHL FSTIKITDLM MNGGSSRSSR FPFTPSQWQE LEHQALIYKY  60
MASGISIPPD LLFSIKRGYH LDHSRLFPPQ HLGWNYLQMG LGRKIDPEPG RCRRTDGKKW  120
RCSKEAYPDS KYCERHMHRG KNRSRKPVEQ SPAAPPTNTD DAAAPSSSTT TTILSITNNN  180
NSLSPLSSAS LSSHQHQHQP SSRSSNSIGF SFQDNNAAPL FLDTQTNTDC RERYIYGLKE  240
EVDEHAFFTE PSGTMRSFSA SSMDDSWQLT PLTISSSTSS NENNNEYSYL QLHHHSFNAD  300
HNNNNSKHQQ GGGCYMALGK EEKPHHQKTT VHRFFDEWPH KSRGGSSWLD LDDKSSTTQL  360
SISIPTSSHD FTTFISRNTR VGPTPWHVGE SKTESKGQQC ALARDEWGLH MDMDMDMVVK  420
KVSIPIPISS APPFFHLCFV NEVQVDLCLH DRDPMS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.Z7CL1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098467e-48AP009846.1 Lotus japonicus genomic DNA, clone: LjT02E24, TM1624a, complete sequence.
GenBankAP0150357e-48AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020959953.10.0growth-regulating factor 6 isoform X1
RefseqXP_025663369.10.0growth-regulating factor 6 isoform X1
TrEMBLA0A444WMY10.0A0A444WMY1_ARAHY; Uncharacterized protein
STRINGGLYMA17G05800.21e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-49growth-regulating factor 5