PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.Z68LQ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 392aa    MW: 43021 Da    PI: 6.7913
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.Z68LQgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-17213267256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Araip.Z68LQ 213 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 267
                  778899***********************************************98 PP
2HD-ZIP_I/II127.27.2e-41213303192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een++L+ke +eLr +lk
  Araip.Z68LQ 213 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRKLHKELQELR-ALK 303
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-18193267IPR009057Homeodomain-like
SuperFamilySSF466891.03E-18200270IPR009057Homeodomain-like
PROSITE profilePS5007117.086209269IPR001356Homeobox domain
SMARTSM003894.9E-16211273IPR001356Homeobox domain
CDDcd000861.91E-15213270No hitNo description
PfamPF000464.7E-15213267IPR001356Homeobox domain
PROSITE patternPS000270244267IPR017970Homeobox, conserved site
PfamPF021831.2E-10269303IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.8E-25269312IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MELGLSLGDS SRPFVGFMEK PRSETSSNQL GLGFTTTTLS IGPIITTKGQ RDQQQEQQPQ  60
QQEHEDKEEA KSKDNNNNNH PHLHQLDFLP QLSLPWHPSE NGRVSKGLDV NVLPLTTVAA  120
TAAAGADDEV EEGEALSSSP NSAASSFQTD LCIFGGGGGS GGGGGSYSGG SGGNYYNYGG  180
KRDHSDGEGY DHQRDSSRAS DEDENCGRGG GTRKKLRLSK EQSAYLEESF KEHNTLNPKQ  240
KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCETLTEENR KLHKELQELR  300
ALKTSNPFYM QLPATTLTMC PSCERVATNP SSNNSASPTP PSNNNSNNNN IINSNNDSNS  360
KVIGFPLGKH TFHPFAHTTQ QQQHHPHQST AS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211217TRKKLRL
2261269RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.Z68LQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016172097.10.0homeobox-leucine zipper protein HOX11-like
RefseqXP_025673325.10.0homeobox-leucine zipper protein HOX11
SwissprotQ6YPD04e-87HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLA0A444Y1090.0A0A444Y109_ARAHY; Uncharacterized protein
STRINGXP_007149086.11e-142(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-55homeobox from Arabidopsis thaliana