PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.Z39NZ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Trihelix
Protein Properties Length: 484aa    MW: 52512.4 Da    PI: 5.9889
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.Z39NZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.34.8e-19121207186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  + +L++a++e+ ++l+rg+l++ +Weev++++  r +  ++s +qCk+k +nl+kryk ++++ +++ + + s++p+f+++e
  Araip.Z39NZ 121 EWSDTAIVCLLDAYTEKFTQLNRGNLRGRDWEEVAAVVseRCENQSKSVEQCKNKVDNLKKRYKLERHRISSG-CITASHWPWFKHME 207
                  5*************************************666677899*************************9.89999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.5E-20119209No hitNo description
Gene3DG3DSA:3.40.1160.107.0E-12258329IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536339.03E-43266477IPR001048Aspartate/glutamate/uridylate kinase
Gene3DG3DSA:3.40.1160.104.0E-37343477IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006963.2E-15360457IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MASCDDDDDD GFSLLHQPYA PPSHHHNYST AVAAATTAVQ PKPVSDTDAE DYSNPFDEDN  60
TTTTHANANT TEKRKDQDEI GNNNNSNDAS YGFNKRSKLT ASAAGSGSAC SGAEYRKDRE  120
EWSDTAIVCL LDAYTEKFTQ LNRGNLRGRD WEEVAAVVSE RCENQSKSVE QCKNKVDNLK  180
KRYKLERHRI SSGCITASHW PWFKHMENIV GNSLSAGKFA GGDEDKAIVA STAGNSPRQP  240
KRYGGASQSS GGQVNNMKSK ALSNLRWRRV ILKISGAALT GSDTCNIDPK VAMLISREVA  300
IASRLGVEVA IVVGGRNFFC GDAWVAATGL ERCSAYQNDG NYDEFNIAPI NSRXXXHRAI  360
RHLEKGRVVI FGGIGFGTGN PLFSTDIAAA LRASELNAEA VLKGTNVDGV YDCNSRDNNF  420
TFEHISFREL VSRGVTPMDM TALTFCEENA IPVVVFNILE PGNISKALCG EQVGTLVDQT  480
GAIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A7e-432594771239Uridylate kinase
3ek5_B7e-432594771239Uridylate kinase
3ek5_C7e-432594771239Uridylate kinase
3ek5_D7e-432594771239Uridylate kinase
3ek5_E7e-432594771239Uridylate kinase
3ek5_F7e-432594771239Uridylate kinase
3ek6_A7e-432594771239Uridylate kinase
3ek6_B7e-432594771239Uridylate kinase
3ek6_C7e-432594771239Uridylate kinase
3ek6_D7e-432594771239Uridylate kinase
3ek6_E7e-432594771239Uridylate kinase
3ek6_F7e-432594771239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.Z39NZ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016184790.10.0uncharacterized protein LOC107626423
TrEMBLA0A445E7530.0A0A445E753_ARAHY; Uncharacterized protein
STRINGXP_007145266.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-167Trihelix family protein