PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.Z2LTK
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 434aa    MW: 49091.4 Da    PI: 7.3836
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.Z2LTKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.73e-234790245
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 + e++snrqvt+skR+ gilKKA+ELS+LCd+++ +++fs+tgk
  Araip.Z2LTK 47 KLESTSNRQVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGK 90
                 679***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.7683890IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-2438121IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-293897IPR002100Transcription factor, MADS-box
CDDcd002661.53E-2539119No hitNo description
PRINTSPR004048.5E-184060IPR002100Transcription factor, MADS-box
PfamPF003193.7E-204891IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-186075IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-187596IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MSAPIITYST GVRHHRHSVN EKKEEWQWHD RCTIHERMGR VKLKIKKLES TSNRQVTYSK  60
RKSGILKKAK ELSILCDIDI VLLMFSPTGK PTLLQGERSN IEEVIAKFAQ LTPQERAKRK  120
LESLEVRHSF HLTFVFSIYC AFDASGTKEN LQEIGSRCKN TRFLGFKQSN CGGINSSSKA  180
STNAANRCTS ETEENLGKHQ IMSLECANQD GMTLPLMMAG LQENQPLSWL LNNDNHQLML  240
PSEPKYLQYS DNTNREAERS TDVSLPGYSS YIANNGKLDS SPQVNTIGQA GSGLNELNGT  300
ACLNIQRCEQ FAYPPPPPPP PDNEEVKHRT TMYNENGHDK LNTSDYQVHN GFDLPRSLFE  360
NGHQFWNSAP GPCGVAMYNE NGYHRVCSPF DFHHVPVLAF VLRNRLTLPP LLTDWLLTFL  420
SFDDVNFEGL QKPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-1438125186MEF2 CHIMERA
6byy_B8e-1438125186MEF2 CHIMERA
6byy_C8e-1438125186MEF2 CHIMERA
6byy_D8e-1438125186MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.Z2LTK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0532127e-85BT053212.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-G-19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015942830.10.0agamous-like MADS-box protein AGL65 isoform X3
RefseqXP_020979429.10.0agamous-like MADS-box protein AGL65 isoform X3
RefseqXP_025618051.10.0agamous-like MADS-box protein AGL65 isoform X3
RefseqXP_025629352.10.0agamous-like MADS-box protein AGL65 isoform X3
TrEMBLA0A445AZN40.0A0A445AZN4_ARAHY; Uncharacterized protein
STRINGGLYMA17G10941.11e-144(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.15e-53AGAMOUS-like 65