PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.Z1XB6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HSF | ||||||||
Protein Properties | Length: 479aa MW: 53977.6 Da PI: 5.477 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.9 | 9e-35 | 20 | 111 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl k+y++++d+++++++sw+ +++nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F k++k+ll++i Araip.Z1XB6 20 FLLKTYDMVDDSATDDIVSWNsSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFHKIHPER---------WEFANDDFIKDQKHLLKNI 107 9********************8889*****************************************999.........******************* PP XXXX CS HSF_DNA-bind 98 krkk 101 +r+k Araip.Z1XB6 108 HRRK 111 **98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.4E-58 | 16 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.45E-34 | 16 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.4E-36 | 16 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.1E-29 | 20 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.4E-18 | 20 | 43 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.4E-18 | 59 | 71 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 60 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.4E-18 | 72 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MEGGAPQSTG GGAGGGPAPF LLKTYDMVDD SATDDIVSWN SSTNNSFVVW NPPEFARLLL 60 PTYFKHNNFS SFIRQLNTYG FHKIHPERWE FANDDFIKDQ KHLLKNIHRR KPIHSHSHPP 120 GSVVDPERAA FEEEIEKLNR EKSSIESNIF SFKQHQSTAK IHLEDFQQRL DGMEKRQKHL 180 LNIFEKALQN PTFVEQLSQK IESIDLSAYN KKRRLPQVDD MQPVVESSFV DNPNNFRMEF 240 GNVFHQDFSN KLRLELSPAV SDMNLVSRST QSSNEHGESP QKKISEGEQT GIQTRTSVPF 300 APETLELADT GASFTFKMDS CLSQRVTNAE SPKLCSLEPS SEEGDSHISC QLTLASCPFK 360 VNRNSYSAKA LQIDSQEIGK LAEPRFHSNS KESDGGVFSN RNGANDATNL ASSLETPSNN 420 QVTQPNRVND VFWEQFLTER PGCSDNEEAI SNYRGNPCDE QDEGRLNARN VKNMDQLTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 8e-20 | 1 | 110 | 8 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-20 | 1 | 110 | 8 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-20 | 1 | 110 | 8 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.Z1XB6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016187704.1 | 0.0 | heat stress transcription factor A-5 | ||||
Refseq | XP_025641406.1 | 0.0 | heat stress transcription factor A-5 | ||||
Swissprot | Q94BZ5 | 1e-160 | HSFA5_ARATH; Heat stress transcription factor A-5 | ||||
TrEMBL | A0A445AB17 | 0.0 | A0A445AB17_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA05G28460.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4961 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 1e-163 | HSF family protein |
Publications ? help Back to Top | |||
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