PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.YTI0W
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LSD
Protein Properties Length: 148aa    MW: 15447.9 Da    PI: 7.7276
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.YTI0WgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD146.17.8e-153054125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C+gCr+lL+YP GA+sV+Ca+C++V
  Araip.YTI0W 30 CSGCRNLLMYPVGATSVCCAVCNAV 54
                 ************************9 PP
2zf-LSD146.85e-156993125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 CggC+tlL+Y rGA+sV+C++C+tV
  Araip.YTI0W 69 CGGCHTLLMYIRGATSVQCSCCHTV 93
                 ************************9 PP
3zf-LSD138.42.1e-12107131125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+Cr lL+Y +GA+sV+Ca+C +V
  Araip.YTI0W 107 CGNCRMLLMYQYGARSVKCAVCSFV 131
                  **********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.105.5E-426128No hitNo description
TIGRFAMsTIGR010536.2E-142757IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-113054IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.2E-146695IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-126993IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.2E-11104133IPR005735Zinc finger, LSD1-type
PfamPF069437.3E-12107131IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MPPVPLAPYP TPSVPYTTPP SNGGQSQLVC SGCRNLLMYP VGATSVCCAV CNAVTAVPPP  60
GTEMAQLICG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC RMLLMYQYGA  120
RSVKCAVCSF VTSVGDSSTS TTEQKFST
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.YTI0W
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201547.11e-103protein LOL1
SwissprotQ93ZB11e-81LOL1_ARATH; Protein LOL1
TrEMBLA0A0B0PTX46e-88A0A0B0PTX4_GOSAR; Protein LOL1-like protein
TrEMBLA0A103XQX87e-88A0A103XQX8_CYNCS; Zinc finger, LSD1-type
TrEMBLA0A1U8KS666e-88A0A1U8KS66_GOSHI; protein LOL1-like
TrEMBLA0A2P5C7N26e-88A0A2P5C7N2_PARAD; Zinc finger, LSD1-type
STRINGcassava4.1_018557m5e-87(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-57lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]