PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.YPB3Q | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GRAS | ||||||||
Protein Properties | Length: 1380aa MW: 156177 Da PI: 5.4592 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 356.9 | 2.9e-109 | 325 | 684 | 1 | 360 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+avss+d++ a++lL+++++++s gd qRla++f++AL+arla+s+++ly +l+++++s ++ ++a+++f ++P+ k++ + a Araip.YPB3Q 325 LRTLLVLCAQAVSSDDHSTATELLKQIRQHSSRLGDGSQRLAHCFANALEARLAGSGTQLYTSLTSKRKS---AADMVKAYQMFISACPFKKLAIIFA 419 5789*********************************************************999998888...99*********************** PP GRAS 99 NqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 N++Il+ ++ + e++Hi+Df+i +G+QWpaL+ L++R +gpp+lRiTg++ p++g +e+++etg+rLak++e+++vpfefn+ +a+++e++++e Araip.YPB3Q 420 NHTILNLAKPKevETLHIVDFGIRYGFQWPALIFRLSNRHGGPPKLRITGIELPQPGfrPAERVQETGRRLAKYCERFNVPFEFNA-IAQKWETIKIE 516 *******99887899*****************************************9*****************************.7********** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 +L++k++E laVn++++ ++llde+v l+s+rd+vLkl+++ +P++++++ + ++n++ F++rf eal +ys+lfd l++++ re+ r + E+e++ Araip.YPB3Q 517 DLKIKENELLAVNCMVRFKNLLDETVVLNSPRDAVLKLIRKANPNIFIHATVNGNYNAPFFVTRFREALFHYSTLFDVLDTNVDREDPMRLMFEEEFF 614 ************************************************************************************************** PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360 gre+vn++aceg+er+er et+++W+ r ++aGF+++pl+++ + ++ l+ v+ ++++ + + +++ Araip.YPB3Q 615 GREVVNIIACEGSERVERPETYKQWQVRNTRAGFRQLPLDDHLIHKLRCKLKDVYHGDFMLDVDGNYMLQ 684 *******************************************************666999988877765 PP | |||||||
2 | GRAS | 262.7 | 1.3e-80 | 1010 | 1284 | 1 | 272 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l++lL+ cA+avs+ d++ a++lL++++++++p+gd++qR a+yf+++L+arl++ ++++ + +t++ + +e l+a+k+f +++P+ kf+++ Araip.YPB3Q 1010 LRTLLVLCAQAVSACDNRTATELLKQIRQHSTPSGDATQRTAHYFANGLEARLHGDGTGTQGFYTYVSTKRLSAAEFLKAYKVFMNACPFSKFANF 1105 5789***************************************************999999888888888888*********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 aN++I++a++++e++HiiDf+i +G+QWp L++ L++R+ gp +l+iTg++ p++g +e+l+etg+rLa+++e+++vpfe+n+++++++e++ Araip.YPB3Q 1106 FANKMIMKAAQNAETLHIIDFGILYGFQWPILIKFLSDRETGPLkKLKITGIEFPQPGfrPAERLNETGRRLANYCERFKVPFEYNAIASRNWETI 1201 ****************************************66544************9*****************************9999***** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 ++e+L+++++E laVn++ + ++l+de+ +++s+rd+vL+l+++++P+++v + + ++n++ F++rf eal ++sa++d+++ Araip.YPB3Q 1202 QVEDLKIESNEFLAVNCHKRFENLMDETIEVNSPRDAVLQLIRKINPDIFVQAIVNGSYNAPFFATRFREALFHFSAIYDMID 1284 ********************************************************************************997 PP | |||||||
3 | GRAS | 40.3 | 4.9e-13 | 1284 | 1350 | 307 | 373 |
GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 r et+++W++r ++aGFk++pl+e+ +++ ++ l++ + + + ++e+ +++++gWk+r L++ ++W Araip.YPB3Q 1284 DRPETYKQWQARNTRAGFKQLPLNEELMAKFSAKLKEWYHKDFVLDEDGNWMLQGWKGRVLYASTCW 1350 699************************************888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.825 | 299 | 678 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-106 | 325 | 684 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 47.984 | 984 | 1378 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.5E-78 | 1010 | 1284 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1380 aa Download sequence Send to blast |
MDPNFNSSFL NGFRFRQVPT IPNVEEQCPD PVNGLETMNF GFMNDPFLLP PDQNNAQNPT 60 SSVSTITTAD EDSPLDDTDF SATVLRYINQ MLMEEDMEEK PCMFHDPLAL QAAEKSLYDA 120 IVVIVAASAP LVLATWLSHI GATLTLQTNN GGGLLGSSGA GFFDSSFLSK SESMLQFKRG 180 MEEASKFLPK GNPLVIDLEN STFNPSFQKA PQHVDIKEER DEREYFSGES KGRKNHERED 240 QVELQDGRSN KQSAIYREDS ELSELFDKIL LGTGCGKEAP PRCICDEDKP NGQDKNVQQK 300 EETNKFSSGK NRVKKQGNKK GVVDLRTLLV LCAQAVSSDD HSTATELLKQ IRQHSSRLGD 360 GSQRLAHCFA NALEARLAGS GTQLYTSLTS KRKSAADMVK AYQMFISACP FKKLAIIFAN 420 HTILNLAKPK EVETLHIVDF GIRYGFQWPA LIFRLSNRHG GPPKLRITGI ELPQPGFRPA 480 ERVQETGRRL AKYCERFNVP FEFNAIAQKW ETIKIEDLKI KENELLAVNC MVRFKNLLDE 540 TVVLNSPRDA VLKLIRKANP NIFIHATVNG NYNAPFFVTR FREALFHYST LFDVLDTNVD 600 REDPMRLMFE EEFFGREVVN IIACEGSERV ERPETYKQWQ VRNTRAGFRQ LPLDDHLIHK 660 LRCKLKDVYH GDFMLDVDGN YMLQGGSDDF MNSFQIGEDG TIVFSDDQNQ FYYDANQHLD 720 PLYQHVADQL FDEFPQYTSH VEEAAAAPVA STVVDPSVED ADFSETAKFI TQVLMEEGVE 780 QRPFYDPFSL NATEQSFYDA LNDVLIDNIN MPLSPNEHPL DPSVSPDTFS SGDHAFQFNS 840 HAISQHDSNV SYANFGVYDV DTSFTKLLAQ NIFSDSDSVS QFRRGLEEAS KFLPPGPQLV 900 TGFETTPAVV VPIDEPKGDK AVGLKGRKNH EREEWSDDTE EGRSNKHSAT SSVVDESELS 960 EMFDKVLLSI GAPMCFPVNN EVEKASNPST SNGGKGRPKR QGKKKETIDL RTLLVLCAQA 1020 VSACDNRTAT ELLKQIRQHS TPSGDATQRT AHYFANGLEA RLHGDGTGTQ GFYTYVSTKR 1080 LSAAEFLKAY KVFMNACPFS KFANFFANKM IMKAAQNAET LHIIDFGILY GFQWPILIKF 1140 LSDRETGPLK KLKITGIEFP QPGFRPAERL NETGRRLANY CERFKVPFEY NAIASRNWET 1200 IQVEDLKIES NEFLAVNCHK RFENLMDETI EVNSPRDAVL QLIRKINPDI FVQAIVNGSY 1260 NAPFFATRFR EALFHFSAIY DMIDRPETYK QWQARNTRAG FKQLPLNEEL MAKFSAKLKE 1320 WYHKDFVLDE DGNWMLQGWK GRVLYASTCW VLVILVWSIS LTLRYCDYYS SKLCTKSYSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-42 | 329 | 1284 | 8 | 331 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.YPB3Q |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020973502.1 | 0.0 | scarecrow-like protein 31 | ||||
Refseq | XP_025641974.1 | 0.0 | scarecrow-like protein 31 | ||||
Swissprot | P0C883 | 0.0 | SCL33_ARATH; Scarecrow-like protein 33 | ||||
TrEMBL | A0A445E4F5 | 0.0 | A0A445E4F5_ARAHY; Uncharacterized protein | ||||
STRING | XP_008223833.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |