PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.YPB3Q
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 1380aa    MW: 156177 Da    PI: 5.4592
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.YPB3QgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.92.9e-1093256841360
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL+ cA+avss+d++ a++lL+++++++s  gd  qRla++f++AL+arla+s+++ly +l+++++s    ++ ++a+++f  ++P+ k++ + a
  Araip.YPB3Q 325 LRTLLVLCAQAVSSDDHSTATELLKQIRQHSSRLGDGSQRLAHCFANALEARLAGSGTQLYTSLTSKRKS---AADMVKAYQMFISACPFKKLAIIFA 419
                  5789*********************************************************999998888...99*********************** PP

         GRAS  99 NqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                  N++Il+ ++ +  e++Hi+Df+i +G+QWpaL+  L++R +gpp+lRiTg++ p++g   +e+++etg+rLak++e+++vpfefn+ +a+++e++++e
  Araip.YPB3Q 420 NHTILNLAKPKevETLHIVDFGIRYGFQWPALIFRLSNRHGGPPKLRITGIELPQPGfrPAERVQETGRRLAKYCERFNVPFEFNA-IAQKWETIKIE 516
                  *******99887899*****************************************9*****************************.7********** PP

         GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                  +L++k++E laVn++++ ++llde+v l+s+rd+vLkl+++ +P++++++  + ++n++ F++rf eal +ys+lfd l++++ re+  r + E+e++
  Araip.YPB3Q 517 DLKIKENELLAVNCMVRFKNLLDETVVLNSPRDAVLKLIRKANPNIFIHATVNGNYNAPFFVTRFREALFHYSTLFDVLDTNVDREDPMRLMFEEEFF 614
                  ************************************************************************************************** PP

         GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                  gre+vn++aceg+er+er et+++W+ r ++aGF+++pl+++   + ++ l+ v+   ++++ + + +++
  Araip.YPB3Q 615 GREVVNIIACEGSERVERPETYKQWQVRNTRAGFRQLPLDDHLIHKLRCKLKDVYHGDFMLDVDGNYMLQ 684
                  *******************************************************666999988877765 PP

2GRAS262.71.3e-80101012841272
         GRAS    1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96  
                   l++lL+ cA+avs+ d++ a++lL++++++++p+gd++qR a+yf+++L+arl++ ++++    +  +t++ + +e l+a+k+f +++P+ kf+++
  Araip.YPB3Q 1010 LRTLLVLCAQAVSACDNRTATELLKQIRQHSTPSGDATQRTAHYFANGLEARLHGDGTGTQGFYTYVSTKRLSAAEFLKAYKVFMNACPFSKFANF 1105
                   5789***************************************************999999888888888888*********************** PP

         GRAS   97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 
                    aN++I++a++++e++HiiDf+i +G+QWp L++ L++R+ gp  +l+iTg++ p++g   +e+l+etg+rLa+++e+++vpfe+n+++++++e++
  Araip.YPB3Q 1106 FANKMIMKAAQNAETLHIIDFGILYGFQWPILIKFLSDRETGPLkKLKITGIEFPQPGfrPAERLNETGRRLANYCERFKVPFEYNAIASRNWETI 1201
                   ****************************************66544************9*****************************9999***** PP

         GRAS  190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 
                   ++e+L+++++E laVn++ + ++l+de+ +++s+rd+vL+l+++++P+++v +  + ++n++ F++rf eal ++sa++d+++
  Araip.YPB3Q 1202 QVEDLKIESNEFLAVNCHKRFENLMDETIEVNSPRDAVLQLIRKINPDIFVQAIVNGSYNAPFFATRFREALFHFSAIYDMID 1284
                   ********************************************************************************997 PP

3GRAS40.34.9e-1312841350307373
         GRAS  307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 
                    r et+++W++r ++aGFk++pl+e+ +++ ++ l++ + + + ++e+ +++++gWk+r L++ ++W
  Araip.YPB3Q 1284 DRPETYKQWQARNTRAGFKQLPLNEELMAKFSAKLKEWYHKDFVLDEDGNWMLQGWKGRVLYASTCW 1350
                   699************************************888************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.825299678IPR005202Transcription factor GRAS
PfamPF035141.0E-106325684IPR005202Transcription factor GRAS
PROSITE profilePS5098547.9849841378IPR005202Transcription factor GRAS
PfamPF035144.5E-7810101284IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1380 aa     Download sequence    Send to blast
MDPNFNSSFL NGFRFRQVPT IPNVEEQCPD PVNGLETMNF GFMNDPFLLP PDQNNAQNPT  60
SSVSTITTAD EDSPLDDTDF SATVLRYINQ MLMEEDMEEK PCMFHDPLAL QAAEKSLYDA  120
IVVIVAASAP LVLATWLSHI GATLTLQTNN GGGLLGSSGA GFFDSSFLSK SESMLQFKRG  180
MEEASKFLPK GNPLVIDLEN STFNPSFQKA PQHVDIKEER DEREYFSGES KGRKNHERED  240
QVELQDGRSN KQSAIYREDS ELSELFDKIL LGTGCGKEAP PRCICDEDKP NGQDKNVQQK  300
EETNKFSSGK NRVKKQGNKK GVVDLRTLLV LCAQAVSSDD HSTATELLKQ IRQHSSRLGD  360
GSQRLAHCFA NALEARLAGS GTQLYTSLTS KRKSAADMVK AYQMFISACP FKKLAIIFAN  420
HTILNLAKPK EVETLHIVDF GIRYGFQWPA LIFRLSNRHG GPPKLRITGI ELPQPGFRPA  480
ERVQETGRRL AKYCERFNVP FEFNAIAQKW ETIKIEDLKI KENELLAVNC MVRFKNLLDE  540
TVVLNSPRDA VLKLIRKANP NIFIHATVNG NYNAPFFVTR FREALFHYST LFDVLDTNVD  600
REDPMRLMFE EEFFGREVVN IIACEGSERV ERPETYKQWQ VRNTRAGFRQ LPLDDHLIHK  660
LRCKLKDVYH GDFMLDVDGN YMLQGGSDDF MNSFQIGEDG TIVFSDDQNQ FYYDANQHLD  720
PLYQHVADQL FDEFPQYTSH VEEAAAAPVA STVVDPSVED ADFSETAKFI TQVLMEEGVE  780
QRPFYDPFSL NATEQSFYDA LNDVLIDNIN MPLSPNEHPL DPSVSPDTFS SGDHAFQFNS  840
HAISQHDSNV SYANFGVYDV DTSFTKLLAQ NIFSDSDSVS QFRRGLEEAS KFLPPGPQLV  900
TGFETTPAVV VPIDEPKGDK AVGLKGRKNH EREEWSDDTE EGRSNKHSAT SSVVDESELS  960
EMFDKVLLSI GAPMCFPVNN EVEKASNPST SNGGKGRPKR QGKKKETIDL RTLLVLCAQA  1020
VSACDNRTAT ELLKQIRQHS TPSGDATQRT AHYFANGLEA RLHGDGTGTQ GFYTYVSTKR  1080
LSAAEFLKAY KVFMNACPFS KFANFFANKM IMKAAQNAET LHIIDFGILY GFQWPILIKF  1140
LSDRETGPLK KLKITGIEFP QPGFRPAERL NETGRRLANY CERFKVPFEY NAIASRNWET  1200
IQVEDLKIES NEFLAVNCHK RFENLMDETI EVNSPRDAVL QLIRKINPDI FVQAIVNGSY  1260
NAPFFATRFR EALFHFSAIY DMIDRPETYK QWQARNTRAG FKQLPLNEEL MAKFSAKLKE  1320
WYHKDFVLDE DGNWMLQGWK GRVLYASTCW VLVILVWSIS LTLRYCDYYS SKLCTKSYSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-4232912848331GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.YPB3Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020973502.10.0scarecrow-like protein 31
RefseqXP_025641974.10.0scarecrow-like protein 31
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLA0A445E4F50.0A0A445E4F5_ARAHY; Uncharacterized protein
STRINGXP_008223833.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14