PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.YK7C2
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRF
Protein Properties Length: 403aa    MW: 46280.3 Da    PI: 7.6161
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.YK7C2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC794.5e-2585128144
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                  d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  Araip.YK7C2  85 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 128
                  79***************************************997 PP
2QLQ56.11.1e-191652137
          QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                 s+FT++Q+q+L++Q+l++Ky++ + P+Pp+L++ i++
  Araip.YK7C2 16 SPFTPNQWQELEQQALVFKYMVTGTPIPPDLIFSIKR 52
                 89*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.2E-121652IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.5031752IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.5E-141750IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.94185129IPR014977WRC domain
PfamPF088793.9E-2186128IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MMSASLSGSA RNSSRSPFTP NQWQELEQQA LVFKYMVTGT PIPPDLIFSI KRSLDSSISS  60
RLFPHHPSGA VGYAYFQMGF GRKVDPEPGR CRRTDGKKWR CSKEAYPDSK YCERHMHRGR  120
NRSRKPVEIS SSSTTNTNTN TNNNNNTSSS QVMNHHHQSS YTVNCTNDSN NNNNMASSTA  180
CSFSFNPSES QQQHQYFSQS YQNPFFYTQS TSSSSSSKHH DADFPPHDAT THHLFMDSGS  240
YSHDQKDYRH IHGMREDVDE RAFFPEASGS ARSYLHDSYQ HHHQQQQQHL SMGSYKNYSS  300
NSHFQIMNNN SNNDDPRNQE QHCFVLGTDF KSTSKEKDNT EKTTSTTQQR PLHHFFGEWP  360
PKNTDSWLDL ASNSRIPSSG IYIYIFNDDY ENLIMFLLPH ILI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.YK7C2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150428e-66AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025677411.10.0growth-regulating factor 5 isoform X1
TrEMBLA0A444XGA10.0A0A444XGA1_ARAHY; Uncharacterized protein
STRINGXP_007135443.11e-160(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-48growth-regulating factor 5